Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03870 ATGAGTCTTCAGGGTCTGGAATTGGCTACTCATGATATTTACCTTCACGGGTATGTTCAGTGCTTCATTAAATTACCTTCTGATTACACTGCTGGAGTTGTTGTTGCATTCTATTTATCAAATGGTGATATGTATGAGAAGAATCATGATGAGATAGACTTTGAATTCTTGGGACATATAAGAGGCAAAGATTGGAGTATTCTATGGACAGATACTAAGATCATATTTTATGTAGATGATGTTCCTATAAGAGAAATAAAGAAAACAGCATCAATGGGAGGAGATTATCCATCAAAACCAATGACATTATATTCAACCATATGGGATGCATCTACATGGGGCTACCCAATTGGAGGAAAATACAAAATACAAAGTGCCTCTACCGGAGTGTGTGATTGA 399 0.3634 MSLQGLELATHDIYLHGYVQCFIKLPSDYTAGVVVAFYLSNGDMYEKNHDEIDFEFLGHIRGKDWSILWTDTKIIFYVDDVPIREIKKTASMGGDYPSKPMTLYSTIWDASTWGYPIGGKYKIQSASTGVCD 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03870 132 Gene3D - 3 65 - -
Vifa3g03870 132 Gene3D - 66 130 - -
Vifa3g03870 132 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 65 124 IPR044791 GO:0004553
Vifa3g03870 132 Pfam Glycosyl hydrolases family 16 7 62 IPR000757 GO:0004553|GO:0005975
Vifa3g03870 132 Pfam Glycosyl hydrolases family 16 64 123 IPR000757 GO:0004553|GO:0005975
Vifa3g03870 132 SUPERFAMILY Concanavalin A-like lectins/glucanases 8 115 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03870 Vifa-Chr3 1140901654 1140904038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03870 5 124 Glycoside Hydrolase AT1G14720 54.248 2.10e-52 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03870 3 1140901654 1140904038 Vifa3g03870 3 1140901654 1140904038 ECH