LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g02399	ATGGCTTCTTCTATTCGCATTAATAATATGCTTGTCGTGGTTATGATAATTAGCTCCTTGGTAGCTACATGTTCTGCTAATTTCAACCAAGACTTTGATGTTACATGGGGTGATCATCGCGCTAAGATATTCAACAATGGTCAGCTTCTATCTCTTTCTCTAGACAAAACTTCTGGCTCTGGTTTTCAATCCAAGAGAGAATATTTATTTGGTAGGATTGATATGCAACTCAAACTCGTTGCTGGAAACTCTGCTGGAACCGTCACTGCTTACTACTTATCATCACAAGGACCAACCCATGATGAGATTGATTTTGAGTTTTTGGGAAACGTTAGTGGCGATCCATACATTCTCCACACAAACGTGTTTTCTCAAGGCAAAGGAAACAGAGAACAACAATTCTATCTCTGGTTCGACCCAACCAAGAACTTCCACACTTACTCTATCATCTGGAAGCCACAACACATTATATTCTTAGTTGACAATATTCCCATAAGATTGTTCAAGAATGCTGAATCTGTCGGTGTTCCATTTCCAAAGAACCAACCAATGAGAATATATTCAAGTCTATGGAATGCTGATGATTGGGCTACACAAGGTGGTTTGGTGAAAACGGATTGGTCCAAAGCACCCTTTACAGCTTACTACCGCAATTTCAAAGCCACCGAACTCTCTTCCAACTCATTCTCTGATTCTACATTGCAGAGCAACGAGCTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAGAAGTACTTTATGATATATAATTACTGCAATGATCTTAAGCGATTCCCACAAGGTATTCCCGTCGAGTGTAAGCGTTCAAGGTTCTGA	840	0.4	MASSIRINNMLVVVMIISSLVATCSANFNQDFDVTWGDHRAKIFNNGQLLSLSLDKTSGSGFQSKREYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRLFKNAESVGVPFPKNQPMRIYSSLWNADDWATQGGLVKTDWSKAPFTAYYRNFKATELSSNSFSDSTLQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGIPVECKRSRF	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g02399	279	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	22	216	IPR000757	GO:0004553\|GO:0005975
	Vifa2g02399	279	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	23	274	IPR044791	GO:0004553
	Vifa2g02399	279	Pfam	Glycosyl hydrolases family 16	29	209	IPR000757	GO:0004553\|GO:0005975
	Vifa2g02399	279	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	233	274	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Vifa2g02399	279	Gene3D	-	13	279	-	-
	Vifa2g02399	279	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	277	IPR013320	-
	Vifa2g02399	279	CDD	GH16_XET	25	274	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vifa2g02399	279	PIRSF	EndGlu_transf	1	279	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vifa2g02399	279	FunFam	Xyloglucan endotransglucosylase/hydrolase	14	276	-	-
	Vifa2g02399	279	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	102	112	IPR008263	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g02399	Vifa-Chr2	620827763	620828896	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g02399	7	278	Glycoside Hydrolase	AT3G23730	72.028	1.69e-162	451

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g02399	2	620827763	620828896	Vifa2g02399	2	620827763	620828896	ECH