Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00076 ATGGCGATGCGCGATCTTATCACCGGTGCTACTTCTTGCCCCGATCCTTCCGCTTCATCTTCCTCGCAAAACCCTCTCGCTTCTTTCGCGAACGTTCTCACCGGTTCTTTATCCAAAACTCAGGAGAGGGTGAGGGAAATTCCTAGTTCGAATTCCACTGGTTCGGCATCACAATTTTACTCTGAGCCTCTTAATCAGCTTCCTGGTTCGGAATTCGATAAACCTTTTATCGAGGCTAATTCTCAGGGTTCGGAGTTTATTAATAGATTTAGATCTGCGGGTGCGGCTGGGTTTGAGGAAACGTGGGGTGAGATTCAACGTGATGGAAGTCAACTTCAGCTCTATGATGGTAGGGGACAGCTTCCACCACAGCTTCATCAACCTGCATTGGATGGGACACCGCAAAGAGTTCTTTCTACCTTTTTGCACTCATTTCTTGACAGCAGTCGTGGTGGAATACCTTTCCATCCCACCTCTCTTCCAGTATTGGGTCTATCTGAAGGTGATAAACAATGTATACGTGACCGTAGCAGCATAATGGCCAGACATCTCTTTGCAGATAAAAGCGAAGAATTTATCCATGCCCAAGTAAATGCTCTTCTGTCCTCTCTAGATATTGACAGCAACGTTCGTGGCAAGGGGCCTATGCCTGAAAGATTTAGGGAGCTTGATGATTATTGGAACGAGTCTCAAGGCAATGTGATACAAGGTGCTCATGCTTCAGATGGATGGATTTCTGAATTCAGTCAAAATAGGGAAAGATATGATAATCCTGATGCTTGGGCTAACTCATTCGAGCAACAACATGGTGTAAATGGTTGGGTCTCTGAATTTGAACATTCTCAATTGTCATCAGTAGATCAAATGCGAGGTATGAACATGCAAAATATTGCTGCAATGGAGCAGACTCGTATGCTTGCAAACACACTGGCCCAGAATGCTGACCCTAAATTTCAGAACTCAAAGTTCTTTCAATTTGTATCAAAGATGAGCCGCGGTGAGTTGATTATCGATGAAAATCAAGTTAAAGAGACTGCATTACCTGCACCTGGAGATTGGGCATCAGAATATCAGCAACAATATAATCACGGTGATGCATGGGCTGGTGAATTCTTAAATAATAAGGCTTTTTCCGGAGTTCGACCTGAACAATGGGCGAAAGAGTTTGCAACTGAAAGACAACAAAATGGAGCAGTTGATGACCAGTGGGTTGATGAATTCTCAAACTTACGTGTTAATGACTGGGCAGAGGAATTTGGTCAGCAGGTTGGTGAAGGAGCCTTCGGGGAAGACTCTTCGAATAATTGGGCTCAGGCATATGACGAGTTCCTGAATGAGCAATATGTTGCCAAGCAGCGGTCAGATAGTTCAAGGGGCGTGTATGTCTTTTCAGATTTAAATCCTTATGTTGGCCATCCAAATCCACTAAAAGAAGGCCAAGATCTCTTCAGAAAAGGGCTTTTAAGTGAAGCTGTTCTAGCACTAGAAGCCGAAGTCTTGAAAAGCCCTGAAAATGCCGAAGGATGGAGACTACTCGGAATAGCACATGCAGAAAATGATGATGATCAACAGGCGATTGCAGCGATGATGCGTGCACAGGAGGCTGATCCAACAAACTTGGAGGTGCTTCTTGCTCTTGGTGTCAGTCATACAAATGAACTGGAGCAAAGTGCCGCGTTGAAGTATCTATTTGGATGGCTACGACATCACCCAAAATATGGAACAATTGCCCCACCTGAGATGTCTGATTCTTTGTACTATGCTGATGTTGCTAGATTATACAACGAAGCAGCTGTAATGTCACCTGATGATGCCGATGTCCACATAGTTCTTGGGGTCCTGTACAACTTATCCAGAGAATACGACAAAGCCATTGCAGCTTTTGAACGGGCATTGAAACTTAAGCCACAAGATTACTCTCTCTGGAATAAGCTTGGTGCGACACAAGCAAACAGTGTTCAAAGTGCTGATGCAATAATGGCTTATCAACAGGCACTAGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGTATCAGTTATGCAAACCAGGGCATGTATGACGAGTCTGTTCGTTATTATGTTCGAGCGCTTGCAATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGAATTTCATTGAGTTGTGCTTCCAGGAATGACATGTTGGAAGCTTGCGATAGTCGTAATTTGGACCTTCTCCAAAAGGAATTCCCTCTGCAGTAA 2235 0.4394 MAMRDLITGATSCPDPSASSSSQNPLASFANVLTGSLSKTQERVREIPSSNSTGSASQFYSEPLNQLPGSEFDKPFIEANSQGSEFINRFRSAGAAGFEETWGEIQRDGSQLQLYDGRGQLPPQLHQPALDGTPQRVLSTFLHSFLDSSRGGIPFHPTSLPVLGLSEGDKQCIRDRSSIMARHLFADKSEEFIHAQVNALLSSLDIDSNVRGKGPMPERFRELDDYWNESQGNVIQGAHASDGWISEFSQNRERYDNPDAWANSFEQQHGVNGWVSEFEHSQLSSVDQMRGMNMQNIAAMEQTRMLANTLAQNADPKFQNSKFFQFVSKMSRGELIIDENQVKETALPAPGDWASEYQQQYNHGDAWAGEFLNNKAFSGVRPEQWAKEFATERQQNGAVDDQWVDEFSNLRVNDWAEEFGQQVGEGAFGEDSSNNWAQAYDEFLNEQYVAKQRSDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKSPENAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQSAALKYLFGWLRHHPKYGTIAPPEMSDSLYYADVARLYNEAAVMSPDDADVHIVLGVLYNLSREYDKAIAAFERALKLKPQDYSLWNKLGATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESVRYYVRALAMNPKAENAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00076 744 Pfam Tetratricopeptide repeat 476 538 - -
Vifa2g00076 744 ProSiteProfiles TPR repeat profile. 639 672 IPR019734 GO:0005515
Vifa2g00076 744 Gene3D Tetratricopeptide repeat domain 455 744 IPR011990 GO:0005515
Vifa2g00076 744 ProSiteProfiles TPR repeat profile. 605 638 IPR019734 GO:0005515
Vifa2g00076 744 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 741 IPR024111 -
Vifa2g00076 744 SMART tpr_5 506 539 IPR019734 GO:0005515
Vifa2g00076 744 SMART tpr_5 605 638 IPR019734 GO:0005515
Vifa2g00076 744 SMART tpr_5 673 706 IPR019734 GO:0005515
Vifa2g00076 744 SMART tpr_5 639 672 IPR019734 GO:0005515
Vifa2g00076 744 ProSiteProfiles TPR repeat region circular profile. 605 638 - -
Vifa2g00076 744 SUPERFAMILY TPR-like 457 743 IPR011990 GO:0005515
Vifa2g00076 744 MobiDBLite consensus disorder prediction 40 64 - -
Vifa2g00076 744 ProSiteProfiles TPR repeat region circular profile. 673 705 - -
Vifa2g00076 744 ProSiteProfiles TPR repeat profile. 673 706 IPR019734 GO:0005515
Vifa2g00076 744 ProSiteProfiles TPR repeat profile. 506 539 IPR019734 GO:0005515
Vifa2g00076 744 FunFam Peroxisome biogenesis protein 5 455 743 - -
Vifa2g00076 744 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g00076 744 Pfam Tetratricopeptide repeat 605 638 IPR001440 GO:0005515
Vifa2g00076 744 Pfam Tetratricopeptide repeat 674 705 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00076 Vifa-Chr2 6962152 6977997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00076 618 736 Glycosyltransferase AT3G04240 31.092 8.82e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00076 2 6962152 6977997 Vifa2g00076 2 6962152 6977997 ECH