Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01674 ATGGTTTTATCATGGACAAAAGGTAGTAGAGTTTTCCGTCGTGCAAGAAAAGGCAAAGAGTTATTATCAAACTCATGCAACGATTTACAAGTGGAGATAGCGGTTCCAACTCATTTTCGTTGCCCAGTAACACTAGATTTAATGAAAGATCCCGTTACACTTTCAACCGGCATAACCTACGACAGGGACAGCATCGAGAAATGGATCGAGTCTGGTAACAAAACGTGTCCGGTTACAAAAACCGAGTTAACGTCCTTTGAAATCATTCCAAATCACTCACTTCGTAGAATGATTCAAGATTGGTGCGTTCAACACCGTTCCTATGGAGTTGAAAGAATCCCAACTCCGCGTATTCCTGTAAGCCCGTACGAGGTTAAAGACGCGTGTACGAGGATCCTGTCGGCGGCGCAAATGGGAGACGAGAGCAAGGTTGTTGAATTGGTGAAGAAGATAAAAGGATGGGGAAAAGAGAGTGAGAGGAACAAGAAATGTATAGTTTCAAATGGTGCTGCTCTCGTTCTTTCGAATGTTTTTGATTCTTTCTCACGTGGTTCAATTGAGAAGAATTTTGTTGTCTTGGAAGAGATTTTGGAGGTGCTGACGTGGATGCGTCCTATTCCTGAAGAGGGTAGATTCCTCTATTTGGGATCTTCAAATTCTTTGAGTTGTTTGGTTTGGTTCTTAAATGATAAACAACAAGTTTCAACTAGACAAAATGCTTCTTTGTTGCTTAAGGAAATTCATGTTGAGTCATTGGTGAAAGTTGAAGGAGTTCTTGAATCTTTGGTGAACATGGTTAAGGTTAATGTTGGTGATGTTTCTACAAAAGCATGTTTGTCAACAATTTTTCACTTGGTTTACTCATCAAAGAATAAAAAAGTGATTATAGAGAGGTTTGTTGAACTGGGTTTAGTTTCAATTTTATTGGAGATTCTAGTTGATGCTGAAAAAGGGACATGTGAGAAAGCTTTAGGCGTTTTGAGTTGTCTTTGTGATAGTGAAAAGGGGGTACAAATAGCAAAGTCAAATGCTTTGACTTTGCCTCTTGTTATTAAGAAGCTTTTGAGGGTTTCTGAATTGAGCTCAAGTTTTGTTGTTTCTATTGTCTACAAGATTTGTGATAAGGCTGAGGAAGGTGTTTTGATTGAGGCAATTCAAGTTGGGATGTTTCAGAAACTACTTGTTTTGTTGCAAGTTGGTTGTGCTGATAGTACAAAGGAGAAAGCAACTGAATTGTTGAAGTTATTGAATGGTTACAAGAGCAAAGCAGAGTGTGTTGATTCATCATTGGATCTCATGCATCTAAAGAAGCCACTCTAG 1320 0.3894 MVLSWTKGSRVFRRARKGKELLSNSCNDLQVEIAVPTHFRCPVTLDLMKDPVTLSTGITYDRDSIEKWIESGNKTCPVTKTELTSFEIIPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVSPYEVKDACTRILSAAQMGDESKVVELVKKIKGWGKESERNKKCIVSNGAALVLSNVFDSFSRGSIEKNFVVLEEILEVLTWMRPIPEEGRFLYLGSSNSLSCLVWFLNDKQQVSTRQNASLLLKEIHVESLVKVEGVLESLVNMVKVNVGDVSTKACLSTIFHLVYSSKNKKVIIERFVELGLVSILLEILVDAEKGTCEKALGVLSCLCDSEKGVQIAKSNALTLPLVIKKLLRVSELSSSFVVSIVYKICDKAEEGVLIEAIQVGMFQKLLVLLQVGCADSTKEKATELLKLLNGYKSKAECVDSSLDLMHLKKPL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01674 439 SUPERFAMILY RING/U-box 32 111 - -
Vifa1g01674 439 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
Vifa1g01674 439 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Vifa1g01674 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 112 IPR013083 -
Vifa1g01674 439 CDD RING-Ubox_PUB 36 87 IPR045210 -
Vifa1g01674 439 PANTHER WDSAM1 PROTEIN 32 426 IPR045185 GO:0061630
Vifa1g01674 439 FunFam RING-type E3 ubiquitin transferase 29 111 - -
Vifa1g01674 439 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Vifa1g01674 439 SUPERFAMILY ARM repeat 137 416 IPR016024 -
Vifa1g01674 439 Gene3D - 127 423 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01674 Vifa-Chr1 274778632 274779951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01674 10 439 U-box Gene Family AT5G37490 44.394 6.63e-116 344
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01674 1 274778632 274779951 Vifa1g01674 1 274778632 274779951 ECH