Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01519 ATGGCTACTCGCAACATTGAAAAGATGGCTTCAATTGATGCCCAGCTGAGATTACTGGCACCAAGAAAAGTTTCTGAGGATGATAAGCTTGTTGAGTATGATGCTTTGTTGTTGGATCGATTCCTTGACATTCTTCAGGATTTGCATGGCGAGGATATAAGACAAACTGTTCAAGATTGTTATGAGTTGTCAGCTGAGTATGAAGGGGAGCATAGGGCAGAGAAACTTGAGGAGCTTGGGAATATGTTGACTGGTCTTGATGCTGGAGATTCTATTGTTATAGCGAAATCGTTTTCTCACATGCTTAATTTGGCGAATTTGGCTGAGGAGGTTCAGATTGCGTATAGGAGGAGGATTAAGTTGTTGAAGAAAGGTGATTTTGGTGATGAGAATTCTGCTATAACTGAGTCCGATATTGAAGAGACTTTTAAGAGGCTTGTCACTGAGCTTAAGAAGACTCCTCAACAGGTTTTTGATGCTTTGAAGAATCAGACTGTGGATTTGGTCTTCACTGCTCATCCTACTCAGTCCGTTCGCCGATCTTTGCTGCAAAAGCATGGAAGGATAAGGAATAATTTAACTAAGTTGTATGCTAAAGATATAACACCAGATGATAAGCAAGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGCACTGATGAAATTCGAAGGACTCCTCCTACACCGCAAGATGAGATGAGGGCGGGAATGAGCTACTTTCATGAGACAATATGGAAAGGAGTCCCGAAGTTTTTGCGTCGCGTTGATACAGCTCTGAAGAACATTGGAGTAAACGAACGTGTCCCGTATAATGCTCCTGTTATCCAGTTCTCTTCTTGGATGGGAGGAGATCGTGACGGTAATCCAAGGGTAACCCCTGAAGTTACAAGGGACGTGTGTTTGCTGGCTCGAATGATGGCTGCTAATTTGTACTTCTCTCAGATAGAGGATCTCATGTTCGAGCTGTCTATGTGGCGTTGCAACGACGAGCTCCGTGTTAGGGCTGATGAGCTCCATAGATCCTCAAAGAGAGATGCAAAACATTATATTGAATTTTGGAAACAGGTTCCTCCGAATGAGCCATATCGTGTTATTCTCGGATACGTGAGGGACAAACTGTATAATACACGTGAACGTGCTCGCCAGTTGTTAGCTAATGAGAACTCTGACATCCCTGAAGAGACAACCTTCACAAATGTTGAGCAGTTTCTGGAGCCTCTTGAACTGTGTTATAGGTCACTCTGTGCAAGTGGTGACCGATCAATTGCAGATGGAAGCTTACTCGATTTCTTACGGCAAGTTTCTACATTTGGACTTTCACTTGTAAGACTCGACATCCGCCAAGAGTCAGAGAGGCACACTGATGTTATGGATGCGATTACAAAACACTTGGAGATTGGATCTTACCGAGAATGGTCAGAGGAACGTAGGCAGGAATGGCTCTTGTCTGAGCTTAGTGGAAAGCGCCCTCTCTTTGGCCGTGATCTTCCTAAGACAGAAGAAATTGCCGATGTTTTAGAAACTTTCCGTGTCATTTCAGAACTTCCCTCAGACAACTTTGGTGCCTATATCATCTCGATGGCAACATCCCCGTCCGATGTTCTTGCTGTCGAGCTTTTACAACGCGAATGTCACGTGAAGCAGCCGTTAAGAGTTGTCCCATTGTTTGAAAAGCTCGCTGATCTCGAGTCTGCTCCTGCTGCGTTAGCACGACTTTTCTCTATAGATTGGTACAGAGACCGAATCAATGGGAAGCAAGAAGTTATGATAGGATACTCAGACTCAGGAAAAGATGCCGGCCGTCTTTCTGCGGCCTGGGCACTATACAAGGCTCAAGAGGAACTCATAAATGTAGCAAAGGAGTTCGGTGTTAAGCTCACGATGTTCCATGGCAGAGGAGGGACAGTTGGAAGAGGAGGAGGTCCTACTCATCTTGCTATATTATCTCAGCCACCGGATACTATTCACGGCTCATTCCGAGTAACAGTTCAAGGTGAAGTTATCGAACAATCGTTCGGAGAGGAGCACTTGTGCTTTAGAACACTTCAGCGTTTCACTGCAGCTACTCTGGAACACGGAATGCATCCTCCTGTGTCGCCAAAACCAGAATGGCGTGCCCTTTTGGATGAGATGGCTGTTATTGCAACAAAGGAGTATCGGTCAATTGTTTTCCAAGAACCTCGTTTTGTTGAATACTTCCGATGTGCAACACCTGAGTTGGAATATGGACGAATGAACATTGGTAGTCGTCCATCAAAACGAAAGCCGAGTGGCGGAATTGAATCACTCCGTGCCATTCCTTGGATTTTCGCTTGGACGCAAACAAGGTTCCATTTACCAGTATGGCTTGGCTTTGGAGAAGCATTCAAACATGCAATAGAGAAAGATCCAAAGAATCTCCAAATGCTTCAAGATATGTACAATCAATGGCCTTTCTTCAGGGTTACCATTGACTTGGTTGAGATGGTTTTCGCCAAAGGAGACCCCGGGATTGCCGCCTTATACGACAAACTCTTAGTTTCAAAAGAACTCTGTCCATTTGGCGAGCGTTTAAGATCGAAGTATGAAGAAACCAAGCTCTTTCTCCTCAAGGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCTTACTTAAAGCAAAGATTAAGACTTAGAGACTCATATATCACAACTCTTAATGTCTTGCAAGCATACACATTGAAGCAAATTCGTGATCCGGATTACCATGTGAAGTTAAGGCCACATTTGTCAAAGGAGTATATGGAATCAAGCAAACCAGCAGCAGAACTTGTTAAACTTAATCCAAAGAGTGAGTATGCTCCTGGTCTTGAGGATACCCTTATTTTGACAATGAAGGGTATAGCTGCTGGCATGCAAAACACTGGTTAA 2901 0.4405 MATRNIEKMASIDAQLRLLAPRKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHRAEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFGDENSAITESDIEETFKRLVTELKKTPQQVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNNLTKLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGVNERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRADELHRSSKRDAKHYIEFWKQVPPNEPYRVILGYVRDKLYNTRERARQLLANENSDIPEETTFTNVEQFLEPLELCYRSLCASGDRSIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVMDAITKHLEIGSYREWSEERRQEWLLSELSGKRPLFGRDLPKTEEIADVLETFRVISELPSDNFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLESAPAALARLFSIDWYRDRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELINVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSFRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALLDEMAVIATKEYRSIVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGEAFKHAIEKDPKNLQMLQDMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSKELCPFGERLRSKYEETKLFLLKVAGHKDILEGDPYLKQRLRLRDSYITTLNVLQAYTLKQIRDPDYHVKLRPHLSKEYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01519 966 PRINTS Phosphoenolpyruvate carboxylase signature 168 181 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 PRINTS Phosphoenolpyruvate carboxylase signature 281 296 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 PRINTS Phosphoenolpyruvate carboxylase signature 221 237 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 PRINTS Phosphoenolpyruvate carboxylase signature 590 610 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 PRINTS Phosphoenolpyruvate carboxylase signature 764 790 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 PRINTS Phosphoenolpyruvate carboxylase signature 441 461 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 PRINTS Phosphoenolpyruvate carboxylase signature 632 661 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 5 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 Pfam Phosphoenolpyruvate carboxylase 36 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 592 604 IPR033129 -
Vifa1g01519 966 Gene3D Phosphoenolpyruvate/pyruvate domain 309 444 - -
Vifa1g01519 966 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 966 IPR022805 GO:0006099|GO:0008964|GO:0015977
Vifa1g01519 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 169 180 IPR018129 -
Vifa1g01519 966 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 966 IPR015813 GO:0003824
Vifa1g01519 966 FunFam Phosphoenolpyruvate carboxylase 1 309 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01519 Vifa-Chr1 249266791 249270635 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01519 1 249266791 249270635 Vifa1g01519 1 249266791 249270635 ECH
Vifa4g00298 4 65878588 65883307 Vifa1g01519 1 249266791 249270635 PCT