Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00952 ATGGAATCTCTAAACAAAGCCTCACTCCTCTTACTCCCTCTCTTGTTCCTTTCCCTGCTCAGTCATTCCCATGGTGAAGGAATAGCTGTGTACTGGGGCCAAAACGGTGGAGAAAGCTCCTTAGCAGAAACTTGCAACACCAAAAACTACCAATTTGTGAACATAGCCTTTTTGTCCACATTTGGCAATGGCCAAACTCCCTCAACTCAGCTGAGGAAGCCAATCAACTTGCAACCTACCTCTGGGACCATTTCCTTGGAGGACAATCTGGTATATAATGCAGGGTCAAGACCATTAGGTGATGCAGTGTTGGATGGCATTGACTTTGACATTGAGTCTGGTGGTAGAGAACATTGGGATGAACTAGCCAGGGCACTCAGTGGGTTCAGTTCACAAAGAAAGGTGTATTTGTCTGCAGCTCCACAGTGCATAATCCCTGATGAACGCTTGGATTCTGCCATCCAAACTGGGCTTTTTGACTATGTCTGGGTTCAGTTCTACAATAACCCATCATGCCAATACTCCGGTGGAAACATCGACAACTTGATCAGTTCATGGAACCAGATGATCACTGTGCCAGCCACACAAGTCTTTATGGGGCTTCCTGCAGCTGAAGCAGTTGCTCCAAGTGGAGGTTTTGTCCCTTCTGATGTGTTGATTTCTCAGGTTCTTCCTAAGATAAAACAGTCTTCAAAGTATGGTGGAGTTATGCTATGGAGCAGATTCTGTGATCTCCAAAATGGTTACAGTAATAATATTATTGGCAGTGTTTAA 774 0.4483 MESLNKASLLLLPLLFLSLLSHSHGEGIAVYWGQNGGESSLAETCNTKNYQFVNIAFLSTFGNGQTPSTQLRKPINLQPTSGTISLEDNLVYNAGSRPLGDAVLDGIDFDIESGGREHWDELARALSGFSSQRKVYLSAAPQCIIPDERLDSAIQTGLFDYVWVQFYNNPSCQYSGGNIDNLISSWNQMITVPATQVFMGLPAAEAVAPSGGFVPSDVLISQVLPKIKQSSKYGGVMLWSRFCDLQNGYSNNIIGSV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00952 257 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 104 112 IPR001579 GO:0004553|GO:0005975
Vian8g00952 257 Pfam Glycosyl hydrolases family 18 98 240 IPR001223 GO:0005975
Vian8g00952 257 Gene3D Glycosidases 80 254 - -
Vian8g00952 257 Gene3D Glycosidases 25 79 - -
Vian8g00952 257 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 257 IPR001223 GO:0005975
Vian8g00952 257 PANTHER ENDOCHITINASE 12 72 - -
Vian8g00952 257 SUPERFAMILY (Trans)glycosidases 22 252 IPR017853 -
Vian8g00952 257 FunFam Uncharacterized protein 108 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00952 Vian-Chr8 24190550 24191400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00952 3 257 Glycoside Hydrolase AT5G24090 46.844 1.71e-82 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00952 8 24190550 24191400 Vian3g00689 3 7048366 7049268 PCT