Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01715 ATGAAACCAAACTTTGATCTTGAAGTTGAGGCACATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCCACACCACAAATCCAATTGGGAGTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCTTCTCAAACCACAGCAGCGACCATATCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCCCACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTGCATGGTTCCTTTAGGTCCTTAGGAGTAAAGGCACACTCTTCACTGCACCATGGCTTCTCACCAACAATGAGGACTCCTGAGATAAAAAGCAACGCAAGATTTGATCAAGGGTATGTTGGCATCCCAATATTCTTGGAAGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTCGAGGCTGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAGATTTGAGTTTTACTGGGGTTAATCCACCTGTAGAAATAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4276 MKPNFDLEVEAHAEYESEVSSQVASNVSIQETSIGPCSDSLTNISHTTNPIGSHPNSDAISLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATISRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYANLASLPLHGSFRSLGVKAHSSLHHGFSPTMRTPEIKSNARFDQGYVGIPIFLEDDESDLLWPGSFRQVVEAGDSHQNFILTGSSDLSFTGVNPPVEIENSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01715 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Vian7g01715 257 FunFam Zinc finger protein 2 83 152 - -
Vian7g01715 257 MobiDBLite consensus disorder prediction 79 98 - -
Vian7g01715 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 55 186 IPR044246 GO:0009788
Vian7g01715 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Vian7g01715 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Vian7g01715 257 Gene3D Classic Zinc Finger 84 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01715 Vian-Chr7 26901004 26901777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01715 88 257 C2H2 Transcription Factor Family AT1G66140 51.741 1.12e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian7g01715 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01715 7 26901004 26901777 Vian7g01715 7 26901004 26901777 ECH