Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01713 ATGGTGTTGTCGTGGACCAAAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAAGAGTTGAGTTCCGGTAGCGATTTGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCCGTGACGATGTCCACGGGGATAACCTACGACAGAGACAGCATCGAAAAGTGGATCGAGTCCGGGAACCGCACCTGCCCGGTTACGAAGACGGAGTTGAACAGCTTCGAGATGATCCCGAACCACTCCATTAGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCTACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTGTCTCCGTACGAGGTTGCTGACACGTGTACGAAGATCCTGTCGGCGGCGCAGCACGGGGACGAGAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCGTGGGGGAAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGTCAACGGTGCTGCTCTAGCACTGGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCCTTGACGTGGATGCGTCCTCTTTCCGAAGATGGTAGATCCGTGTTGGGGTCAGTGAGTTCTATTGGTTGCATGGTTTGGTTCATGAATGGTAAACAATTGGCGACAAGGCAGAACGCTGCTTTGTTGCTGAAGGAAATGCGTGTTGAGGCGTTGGTGAAATGTGAAGGGGTTTTGGAAGCTTTGGTTAACATGGTTAAGGAGCCAGCTGGTAGTGCTTCCTCAAAGGCATGTTTATCAACGATTTTTAAGTTGGTTAATTCATCAATGAGTAATAGGGGTAGGAGTTGCGAGAGATTGGTGGAGTTGGGTTTGGTTTCGGTGTTGTTGGAGGTTCTTGTTGATGCGGAGAAAGGGGTGTGTGAGAAGGCTTTGGGGGTATTGGATTGTCTTTGTGATTCTAAACAAGGGTTGCAAATGGCTAAAAGTAATGCTTTGACTTTGCCTGTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAGTTGAGTTCCAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGAGACGTTGGTCGAGGCTCTTCAAATTGGAGTATTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGCTGAGGGCACCAAAGAGAAAGCTACGGAGTTGTTGAAATCATTGAATGGTTGCAGGAGCAAAGCTGAGTGTGTGGACTCCTCCTTGGATTTCAAGCACTTGAAGAAACCCTTCTAA 1308 0.4946 MVLSWTKGRVFRRARKGKELSSGSDLEIEIAIPTHFRCPVTLDMMKDPVTMSTGITYDRDSIEKWIESGNRTCPVTKTELNSFEMIPNHSIRRMIQDWCVEHRSYGIERIPTPRIPVSPYEVADTCTKILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSVSSIGCMVWFMNGKQLATRQNAALLLKEMRVEALVKCEGVLEALVNMVKEPAGSASSKACLSTIFKLVNSSMSNRGRSCERLVELGLVSVLLEVLVDAEKGVCEKALGVLDCLCDSKQGLQMAKSNALTLPVVIKKLLRVSELSSSFAVSVLWKVCDKTEEETLVEALQIGVFHKLLVLLQVGCAEGTKEKATELLKSLNGCRSKAECVDSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01713 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Vian7g01713 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Vian7g01713 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Vian7g01713 435 SUPERFAMILY RING/U-box 27 108 - -
Vian7g01713 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Vian7g01713 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Vian7g01713 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Vian7g01713 435 SUPERFAMILY ARM repeat 126 409 IPR016024 -
Vian7g01713 435 Gene3D - 123 420 IPR011989 -
Vian7g01713 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01713 Vian-Chr7 26858226 26859533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01713 24 435 U-box Gene Family AT5G37490 44.630 6.92e-120 354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01713 7 26858226 26859533 Vian7g01713 7 26858226 26859533 ECH