Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01133 ATGGACGCCTCCGCCGAGCCCAGCCCGAGTTCGGAGCTACGCCTCAACGGGGCATCCGAGGATCCAAATCGAGGTGGGTCGGGTCAGAATTCGACGGCGAGGTACAAGCTGATTGCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCAGGACTGAGTCCGACATCGTTTCTGGAATCACCGGTTCTTCTCTCTAACATGAAGGTGGAGTCTTCACCAACTACAGGGTCCCTCCGCAAGCTTCAACAAACAGTACATGGTTCTAAGGCCTCTGCTACATTTGCAGTAACCACTGCATGCTTCAATACCAATACTGTTGATGACAGGAAATCAAGCTTCTTTGAGTTTAAACCACTCAACAGGTTGAATATGGTTCCTGCAGACTTCAATAACCATGTTATCAAACAATCAACTCAAGCAGAAGGTCTAGGAAAAGCACAATCATTTGTTTCCTCACCATTAGTTGAAAGTGAGATAGCAGTTCCTGCTAACGAATTAAGTCTATCATCACCTGTACAAATGGTTAGTTCTAGTCCTAGTGCTCCTGTTGATGTTGATTTGGATGACGTTAACCACAAAAGCAACACAGCTACTGGGCTTCAAGAATCGCATGTTGAGGTTAGAGGCAATGGAATTTCAGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATACGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTGTTTGAACGCTCTCATGATGGTCAAATCGCGGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGGTACTATTATGTCTATTCAAGTAGAGAGATCCGATAAGGATTCTTCTTTGGCTGGCCTAGATGACAAAGCATCCTCCATGTATGGTCAGTTGTCCCATGCTGCTGAGCGCAACAGTGCTTCTGAGCCATCAACCATAGCAACAAACGATGATGGTTTAGAGGGTGTTGGGTTTGTGTCAAACAGGATTAGTGATGACACTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAGTGTTGACATCACTCCTGTAGTGAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCGGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCAAAGAATAGCAGCCATGACATGGCAGTAGCTGCAGCTGGACAGACAAGAATTAAGTTGGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGAATTAGCTCAGCTGCTGAACATAGATCAAACGCACAAGGGAAAATAATGCACTCTGAATTTGGGAGCACTCAAACTCACACTAGTAATTCTAATTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCAGCTTTAAACCATGCCTCGTATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATGA 1740 0.4466 MDASAEPSPSSELRLNGASEDPNRGGSGQNSTARYKLIAPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVESSPTTGSLRKLQQTVHGSKASATFAVTTACFNTNTVDDRKSSFFEFKPLNRLNMVPADFNNHVIKQSTQAEGLGKAQSFVSSPLVESEIAVPANELSLSSPVQMVSSSPSAPVDVDLDDVNHKSNTATGLQESHVEVRGNGISVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIAEIIYKGTHDHPKPQPSCRYSTGTIMSIQVERSDKDSSLAGLDDKASSMYGQLSHAAERNSASEPSTIATNDDGLEGVGFVSNRISDDTDDDDPFSKRRKMELGSVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSAAEHRSNAQGKIMHSEFGSTQTHTSNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSDGPALNHASYPCPQSMGRILMGP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01133 579 SUPERFAMILY WRKY DNA-binding domain 222 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 FunFam WRKY transcription factor 33 388 454 - -
Vian7g01133 579 MobiDBLite consensus disorder prediction 322 367 - -
Vian7g01133 579 Gene3D WRKY domain 386 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 Gene3D WRKY domain 217 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 ProSiteProfiles WRKY domain profile. 220 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 141 502 IPR044810 GO:0003700
Vian7g01133 579 Pfam WRKY DNA -binding domain 402 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 ProSiteProfiles WRKY domain profile. 396 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 MobiDBLite consensus disorder prediction 1 31 - -
Vian7g01133 579 SUPERFAMILY WRKY DNA-binding domain 393 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 MobiDBLite consensus disorder prediction 9 31 - -
Vian7g01133 579 MobiDBLite consensus disorder prediction 323 340 - -
Vian7g01133 579 FunFam WRKY transcription factor 215 285 - -
Vian7g01133 579 SMART WRKY_cls 401 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01133 579 SMART WRKY_cls 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01133 Vian-Chr7 19536945 19542170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01133 38 579 WRKY Transcription Factor Family AT4G26640 55.009 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian7g01133 WRKY 1.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01133 7 19536945 19542170 Vian7g01133 7 19536945 19542170 ECH
Vian6g00450 6 18801935 18807001 Vian7g01133 7 19536945 19542170 PCT