Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00273 ATGAGGGATGAAGAAATCGAGAAGCTCCGAGGTGTGGTGCGCGACTGCGTGAGCAAACACCTCTATTCCTCCGCCATCTTCTTCGCCGATAAAGTCGCCGCCTTCACCGCCGACCCCGCCGACATCTACATGCAGGCGCAGGCGCTCTTCCTTGGCCGCCACTACCGCCGTGCCTTCCACCTCCTCAATGCTTCCAAAATCGTTCTCAGCGACCTCCGATTCCGCTACCTCGCCGCCAAGTGTCTCGAAGAATTGAAGGAGTGGGATCAGTGCCTGTCGATGCTGGGTGAGGCTAAAGTAGATGACGAGGGAAATGTTTCTGATACCAAGGACTCGAATGTCATGTACTTGGATAAAGATTGTGAGGATCGTGAAATCAATATATCTTCTGCAATATGCTTCTTAAGAGGAAAAGCATACGAGGCTCTAGAAAACCGGGCCCAGGCTAGACTATGGTATAAAGCTGCTATAAAAGCGGATCCTTTATGTTATGAGGCTTTGGAATGTCTTATTGAGAATCACATGCTTACATGCCAGGAAGAAGCAAATTTGATATCGTCATTGCAATTTGGTAGTGAGGACGGGTGGCTTTCTTCATTTTATTCTTGTTTGATAAAGAAGTATGACAAAGAAAATGTTGTAGAAGCCAAGTTTAGAGAACTTGAGAATGAAAGCTGTAAAAGTGACCAATCTGATACTTCTTTTTTCCGCACACTGAAATCCAATACTGATCTATTGGCATGCAAAGCTGAATACTACCATCAATGTGGTGAATATCAGAAATGTTTTGACTTAACATATGTTTTGCTTGAGAGGGATCTTTTCCATCTCAAGTGTACGTTAGTACATCTGGCAGCTGCTGTTGAACTTGGGCATTCAAATGAACTCTATTTGATGGCATGCAATTTGGTGAAGGATTATCCTCAGATGGCTTTATCATGGTTTGCTGTTGGTTGCTACTACTATTGTATCAAGAAGTATGATCAATCCCGTCGTTATTTTAGCAAGGCAACTAGTCTAGATGGAACATTCCCCCCTGCATGGATAGGCTATGGGAATGCTTATGCTGCTCAAGAAGAGGGTGATCAGGCTATGTCAGCGTACCGCACCGCAGCTAGATTGTTTCCTGGGTGTCACTTACCAACCCTTTACATTGGAATGGAATGCATGCGGACCCACAGCTATAAGCTTGCTGAGCAGGCCAAATCAACTTGCCCCTCAGATCCACTTGTGTATAATGAACTTGGAGTTGTTGCCTATCATATGAAGGAGTATAAGAAAGCTGTGTGGTGGTTTGAGAAAACATTAGCATTGATACCAACTGCTTTATCTGAGATGTGGGAATCGACTGTAGTCAATCTTGCCCATGCATACAGAAAACTGAAGATGTACCAAGAAGCAATTTCGTACTATGAGAAGGCACTTGCATTATCAACGAGAAGTGTGAGCACTTATGCTGGTCTTGCATATACTTATCACTTACAGACTTTTATGTATAAGTTGGGTTGGAAATTTGGATTTGTGGTTTCATCATGTGTTAACGCACTTCCTGTGAACATGTTGCTCGTGCTACCTGGACATGGCCCTGTGGCTGTGAATGGCTCATACGATGATTTCACTACAGCAATAACATATTATCACAAAGTGAGTAACTCTGTTCCAATATTGGCCTTGTGGCTTAAACCAGATGATCAGTTCTGCACTGAGATGTTAAGTTGGGCTCTAATAGATGAAAAGTCTAAGGGGCTTTGA 1752 0.4366 MRDEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFHLLNASKIVLSDLRFRYLAAKCLEELKEWDQCLSMLGEAKVDDEGNVSDTKDSNVMYLDKDCEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCQEEANLISSLQFGSEDGWLSSFYSCLIKKYDKENVVEAKFRELENESCKSDQSDTSFFRTLKSNTDLLACKAEYYHQCGEYQKCFDLTYVLLERDLFHLKCTLVHLAAAVELGHSNELYLMACNLVKDYPQMALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFPPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYKLAEQAKSTCPSDPLVYNELGVVAYHMKEYKKAVWWFEKTLALIPTALSEMWESTVVNLAHAYRKLKMYQEAISYYEKALALSTRSVSTYAGLAYTYHLQTFMYKLGWKFGFVVSSCVNALPVNMLLVLPGHGPVAVNGSYDDFTTAITYYHKVSNSVPILALWLKPDDQFCTEMLSWALIDEKSKGL 583
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00273 583 SUPERFAMILY TPR-like 307 490 IPR011990 GO:0005515
Vian5g00273 583 SUPERFAMILY TPR-like 41 174 IPR011990 GO:0005515
Vian5g00273 583 Pfam Tetratricopeptide repeat 453 477 IPR001440 GO:0005515
Vian5g00273 583 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Vian5g00273 583 ProSiteProfiles TPR repeat profile. 448 481 IPR019734 GO:0005515
Vian5g00273 583 Gene3D Tetratricopeptide repeat domain 5 577 IPR011990 GO:0005515
Vian5g00273 583 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Vian5g00273 583 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Vian5g00273 583 SMART tpr_5 448 481 IPR019734 GO:0005515
Vian5g00273 583 SMART tpr_5 345 378 IPR019734 GO:0005515
Vian5g00273 583 SMART tpr_5 409 442 IPR019734 GO:0005515
Vian5g00273 583 SMART tpr_5 130 163 IPR019734 GO:0005515
Vian5g00273 583 SMART tpr_5 311 344 IPR019734 GO:0005515
Vian5g00273 583 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Vian5g00273 583 PANTHER CELL DIVISION CYCLE 16,23,27 22 567 - -
Vian5g00273 583 Pfam Tetratricopeptide repeat 319 377 - -
Vian5g00273 583 ProSiteProfiles TPR repeat profile. 409 442 IPR019734 GO:0005515
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00273 328 495 Glycosyltransferase AT3G04240 26.286 8.11e-07 50.1
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00273 5 5889769 5898845 Vian5g00273 5 5889769 5898845 ECH