Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03222 ATGGCTTCTTCTACTGGTATTATGTTTTACGCCCTTCTGCTAGGGCTGGTGGTGGCTACCTCCATGGTGGCTAAATGTGCTGCTAACTTCTACCAAGACTTTGATCTCACATGGGGTGACCACCGTGCTAAGATATTCGGCGGTGGTCAGCTTCTATCTCTTTCGCTCGATAAAGTCTCTGGCTCTGGCTTCCGATCCAAGAAAGAGTACTTATTTGGGAGGATCGATATGCAGCTCAAACTCGTCGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCATCTCAGGGACCAACCCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGTGGCGACCCTTATATTCTCCACACAAACGTGTTTACCCAAGGCAAAGGAAACAGAGAGCAACAGTTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATCATCTTCTTGGTGGACAACATTCCCATAAGGGTGTTCAAGAATGCTGAGAGTGCCGGTGTTCCTTTCCCGAAGAACCAACCCATGAGAATCTATTCTAGCCTGTGGAATGCTGATGACTGGGCAACTAGAGGTGGCTTGGTGAAAACTGATTGGTCCAAGGCACCGTTTACAGCGTACTACCGCAATTTCAAAGCCACGGAGTTCTCGGGGTCTTCCAATTCATTCTCTGATGCTGCATTGCAGAGCACGGAGCTTGACGCCTATGGCAGAAGAAGACTTAGATGGGTTCAAAAGTACTTCATGATCTATAACTACTGCAACGACCTTAAGCGATTCCCACAAGGCCTTCCTGCGGAGTGCAAACGCTGA 843 0.4864 MASSTGIMFYALLLGLVVATSMVAKCAANFYQDFDLTWGDHRAKIFGGGQLLSLSLDKVSGSGFRSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAESAGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSGSSNSFSDAALQSTELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGLPAECKR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03222 280 Gene3D - 16 280 - -
Vian2g03222 280 ProSitePatterns Glycosyl hydrolases family 16 active sites. 104 114 IPR008263 GO:0004553|GO:0005975
Vian2g03222 280 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 25 278 IPR044791 GO:0004553
Vian2g03222 280 Pfam Glycosyl hydrolases family 16 31 211 IPR000757 GO:0004553|GO:0005975
Vian2g03222 280 CDD GH16_XET 27 278 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian2g03222 280 PRINTS Glycosyl hydrolase family 16 signature 138 155 IPR008264 GO:0004553|GO:0005975
Vian2g03222 280 PRINTS Glycosyl hydrolase family 16 signature 120 133 IPR008264 GO:0004553|GO:0005975
Vian2g03222 280 PRINTS Glycosyl hydrolase family 16 signature 62 80 IPR008264 GO:0004553|GO:0005975
Vian2g03222 280 PIRSF EndGlu_transf 1 280 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian2g03222 280 FunFam Xyloglucan endotransglucosylase/hydrolase 17 280 - -
Vian2g03222 280 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 279 IPR013320 -
Vian2g03222 280 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 235 278 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vian2g03222 280 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 218 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03222 Vian-Chr2 52537987 52539163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03222 14 280 Glycoside Hydrolase AT4G14130 76.786 8.65e-163 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03222 2 52537987 52539163 Vian2g03222 2 52537987 52539163 ECH