Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04140 ATGGCGACGATGACGAGCTTGATCGGTCTCATCAATAAGATCCAACGAGCCTGCACCGTTTTAGGAGATCACGGCGGCGAGGGTTTATCGCTTTGGGAAGCTCTTCCATCCGTCGCCGTCGTCGGTGGCCAGAGTTCGGGAAAATCGTCGGTGCTTGAAAGCGTGGTCGGAAGAGATTTTCTACCTCGTGGATCTGGTATTGTTACACGGAGACCATTAGTGCTGCAACTTCACAAGACAGACAATGGGACGCAGGAGTATGCGGAGTTTCTTCACTTACCGAGAAAGAGATTCACTGACTTTGCTGCTGTGAGGAAGGAAATAGCAGACGAAACAGATCGTATAACTGGGAAGACAAAACAAATTTCTAACATTCCAATTCATCTCAGCATTTATTCTCCCAATGTTGTAAACTTAACCCTCATAGATCTTCCTGGGCTGACAAAGGTTGCAGTAGAGGGACAGCAAGAGAGTATTGTTCAAGATATTGAAAACATGGTCCGCTCTTATGTTGAAAAGCCAAATTGCATTATCTTAGCTATCTCTCCTGCAAATCAAGATATTGCCACATCAGATGCCATAAAAATCGCTCGAGAAGTTGACCCTTCAGGTGAAAGAACGTTTGGTGTTGTTACCAAACTTGATCTTATGGATAAAGGAACTAATGCGGTTGATGTACTCGAGGGAAGGCAATACAGGCTGCAGCATCCATGGGTTGGAATTGTGAACCGTTCACAAGCTGATATTAATCGGAATGTTGACATGATTGCTGCTCGTAGGAAGGAGCGTGAATATTTTGAGACAAGTCCCGAATATGGACATTTGGCACATAAAATGGGATCAGAATATCTTGCTAAGCTTTTATCTCAGCAAGTTATCAGACAGAAAATACCAAGTATCATTGCCTTAATTAATAAAACTATTGACGAGCTAAATGCCGAGTTGGACCGTATTGGCAGACCAATTGCTGTGGATTCAGGGGCCCAACTCTACACTATTTTAGAGATGTGTCGTGCATTTGATAAAGTATTTAAAGAGCACCTGGAGGGAGGTCGTCCTGGTGGGGACCGGATATACGGAGTTTTTGATCACCAGTTACCAGCTGCTTTAAAAAAGCTTCCTTTCGATCGCCATCTTTCCCTGAAAAATGTCCAGAGGGTTGTCACTGAAGCTGATGGGTATCAGCCCCATCTAATTGCTCCAGAGCAGGGTTACCGAAGACTCATTGAAGGATCTATAGGCTATTTCAAAGGCCCAGCTGAAGCCTCCGTGGATGCTGTTCACTTTGTTTTAAAGGAACTTGTACGGAAATCAATTACAGAAACTGAGGCTAATAATGAAGGGTATGAGTCATTGCTAAAAACTGATGAACTAAAAAGATTTCCAACACTTTCCAATGATATAGCAACTGCTGCGAATGAAGCTCTGGAAAAATTCCGAGAAGAAAGCAGGAAGACAGTTACACGGTTGGTTGATATGGAGTCTAGCTATCTAACAGTGGAGTTTTTCAGGAAGATTCATTTTGAACCAGAAAAGAATCCAAATGGACCACCAAATCCAAATCGGAATGGTCCCCCAAATATGGACAGTTATACTGACAATCACCTGCGCAAAATTGGAACAAATGTAAGTTCCTATATCAATATGGTTTGCGATACACTTAAGAATACCATACCCAAGGCTGTCGTTCATTGTCAAGTCAGAGAGGCTAAGCGATCTTTGCTGAACCACTTTTACGTTCAAGTTGGGAGGAAGGAGAAGGAAAAATTGGGTGCCATGTTGGATGAAGATCCAGCCCTTATGGAAAGGAGAAATCAAATAGCCAAAAGGCTTGAATTATACAAGCAAGCTAGGGATGACATTGACTCGGTGACTTGGAAATAA 1884 0.4294 MATMTSLIGLINKIQRACTVLGDHGGEGLSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTDNGTQEYAEFLHLPRKRFTDFAAVRKEIADETDRITGKTKQISNIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQQESIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKIAREVDPSGERTFGVVTKLDLMDKGTNAVDVLEGRQYRLQHPWVGIVNRSQADINRNVDMIAARRKEREYFETSPEYGHLAHKMGSEYLAKLLSQQVIRQKIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILEMCRAFDKVFKEHLEGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSLKNVQRVVTEADGYQPHLIAPEQGYRRLIEGSIGYFKGPAEASVDAVHFVLKELVRKSITETEANNEGYESLLKTDELKRFPTLSNDIATAANEALEKFREESRKTVTRLVDMESSYLTVEFFRKIHFEPEKNPNGPPNPNRNGPPNMDSYTDNHLRKIGTNVSSYINMVCDTLKNTIPKAVVHCQVREAKRSLLNHFYVQVGRKEKEKLGAMLDEDPALMERRNQIAKRLELYKQARDDIDSVTWK 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04140 627 ProSiteProfiles GED domain profile. 536 627 IPR020850 -
Vian1g04140 627 Pfam Dynamin family 38 213 IPR045063 -
Vian1g04140 627 Pfam Dynamin GTPase effector domain 532 624 IPR003130 GO:0003924|GO:0005525
Vian1g04140 627 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 298 IPR030381 GO:0005525
Vian1g04140 627 FunFam dynamin-related protein 1E 4 307 - -
Vian1g04140 627 PRINTS Dynamin signature 183 201 IPR022812 -
Vian1g04140 627 PRINTS Dynamin signature 225 244 IPR022812 -
Vian1g04140 627 PRINTS Dynamin signature 202 218 IPR022812 -
Vian1g04140 627 PRINTS Dynamin signature 35 53 IPR022812 -
Vian1g04140 627 PRINTS Dynamin signature 133 150 IPR022812 -
Vian1g04140 627 PRINTS Dynamin signature 60 77 IPR022812 -
Vian1g04140 627 Gene3D - 4 307 IPR027417 -
Vian1g04140 627 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Vian1g04140 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 300 IPR027417 -
Vian1g04140 627 PANTHER DYNAMIN 6 624 IPR022812 -
Vian1g04140 627 CDD DLP_1 35 301 IPR001401 GO:0003924|GO:0005525
Vian1g04140 627 Pfam Dynamin central region 222 499 IPR000375 -
Vian1g04140 627 MobiDBLite consensus disorder prediction 509 532 - -
Vian1g04140 627 SMART dynamin_3 4 252 IPR001401 GO:0003924|GO:0005525
Vian1g04140 627 Gene3D Dynamin, middle domain 331 604 - -
Vian1g04140 627 SMART GED_2 531 624 IPR003130 GO:0003924|GO:0005525
Vian1g04140 627 FunFam Dynamin-related protein 1C 329 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04140 Vian-Chr1 64417321 64424962 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04140 1 64417321 64424962 Vian1g04140 1 64417321 64424962 ECH