Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04135 ATGATGTCGTGGGAAGACGAGATTGTGATGCGCGATGTCACGAATGCGGGGCTTGTTGTCAGTGATCGCATTGGTCGGGAAGTTTCCTCTCAGCTCGACCTCGAAGAAGCTCTAGAAGCTTCCAGATACACCAGCCACCCTTATTCCACTCACCCCCGAGAGTGGCCCCCTTCCGTTGAGGTAGTGAATACCTGGGAGTTGCCCCCTGTGCTCATTGAAAGATACAATGCAGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCAGAAATAAGGAGGGCGTGGGCGTCTGTGGACAATTCATTGTTTCTTTGGCGTTTTGACAAGTGGGATGGCCAATGTCCTGAATTTAGTGGGGAGGAGCAAGCCATTTGTGCGGTTGGTCTTGCAAAATCAAAGCCTGGTGTTTTTGTTGAAGCTATCCAGTATGTTTTAGTTTTGGCAACACCTGTTGAGTTAATTTTAGTTGGAGTTTGTTGCTCTGGAGGAGCAGATGGTTCAGATCCGTTTGCGGAAGTTACATTGCAGCCTTTGCCAGAGCATACAATATCATCTGACGGGGTTACAATGACTTGTGTAGCATGTACTGACAAAGGTCGTATTTTTCTTGCTGGTCGGGATGGCCACATATATGAGGTTCTTTACTCAACTGGCTCTGGATGGCAAAAGCGCTGCCGAAAAATCTGCATGACTGCTGGTTTTGGAAGTGTCATTTCAAGATGGGTTATACCAAATGTATTTAATTTTGGAGCTGTTGATGCTATTGTTGAAATGGTTTTTGACAATGAGAGACAAATATTATATGCACGGACTGAAGAGATGAAGATTCAAGTTTATGTTATAGGACCAAATGGTGATGGGCCGTTAAAGAAAGTAGCTGAAGAAAAGAATCTTGTCAATCAGAGGGATGCACATTATGGAGCTAGACAATCAACTGGATCAAGAGTCTCAAGTCGATCTCCAAAGCCATCTATCATATGCATCTCACCTTTATCTACTCTTGAATCAAAGTGGCTGCATCTGGTTGCTCTTTTATCAGATGGTAGAAGGATGTACCTATCTACCTCTCCTTCTAGTGGAAGCTTGACTGGATTTAACACCAATCATCACAAGCCTAGCTGTTTAAAGGTTGTCACTACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGAGGTTTAACCTTTGGGGCAATGGCTCTTGCTGGTAGACCCCAGAATGAGGATCTCTCCCTAAAAATTGAGGCATCTTATTATTCTGCTGGAACTCTTATCCTCTCTGATGCGTCATCTTCAACCATGCCATCACTTCTTGTTTTGAGCAGGGATTCAAGCACACAGTCATTACCATCAGGTAATTTAGGAACAAGTACCAGGAGTTCCCGGGCATTACGAGAGTCTGTATCTTCTTTACCAGTTGAAGGACGAATGCTTTCAGTGGCAGATGTTTTACCTTCACCGGATACTGCAGCTACTGTGCAGTCTCTGTATTCAGAAATTGAGTTTGGTGGTTATGAGGGCTCTATTGAATCATGTGAAAAGTTGTCTGGCAAACTCTGGGCTAGGGGAGATCTCTCAACCCAACACATACTGCCAAGAAGAAGGATTGTTGTCTTTAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTGGACATTCTAAGGCGGCTATTGGAATCGAACACTCCAAGGTCAGTTTTAGAAGATTTCTTCAATCGATTTGGTGCAGGTGAGGCTGCTGCAATGTGTTTAATGCTTGCTGCAAGAGTAGTGCATTCTGAAAACCTTATAAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGATCCAAGGGTTGTTGGCATGCCACAACTTGAAGGTAGTAATGCATTATCAAACACAAGAAGTGCTGCTGGGGGATTCAGCATGGGCCAAGTTGTTCAGGAAGCTGAGCCTGTTTTTTCAGCCGCACATGAGGGGCTCTGTTTGTGTTCATCTAGATTACTTTTTCCCCTATGGGAGCTTCCTGTAATGGTTGTAAAAGGCAATTTAGGTCCTTCAGGCACCCTATCTGAAAATGGCGTAGTTGTGTGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACAGAAACTCCGTTCTTTGGAGAAATTCTTAAGATCAAGAAGGAACCAGAGAAGGGGACTTTATGGCTGTGTAGCAGGATTGGGAGATCTGAGTGGTTCCATTCTGTATGGTAATGGTTCGACATTGGCTGCTGATGATCGCAATATGGTCAGAAATTTATTTGGTGCATATTCCAGAAATATGGAGTCCAATGGTAGCAGAACAAATAATAAAAGGCAAAGGTTGCCTTATAGTCCTGCTGAATTAGCTGCCATGGAGGTGAGAGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGCGAAGCCCTATTTTTGCTTCAACTTCTGTCACAGCATCATGTGACTCGATTAATTCAGGGATTTGACTCTGGCCTTCAACAAACATTAGTTCAATTGACATTTCATCAACTAGTCTGTTCTGAGGAGGGTGACCATATTGCTACTAGACTTATATCTGCTCTTATGGAGTATTATACTGGTCCTGATGGCAGGGGGACTGTAGATGACATTAGTAGGAGATTGCGAGATGGCTGCCCAAGTTACTATAAGGAGTCTGATTACAAATTCTTCTTAGCTGTGGAAGCACTGGAGAGAGCTGCTACGACCATAGATGCCGAAGACAAGGAGAATCTTGCGAGGGAAGCATTTAATTCCTTGAGTAAAGTTCCAGAATCTGTTGACCTACGAACTGTTTGCAAGCGTTTTGAGGATTTAAGATTTTATGAAGCTGTAGTGCGCTTACCTCTTCAAAAGGCACAGGCTCTTGACCCTGCAGGTGATGCTTATAATGATGAAATTGATGCAACTGTCAGAGAACAAGCACTTGCTCACCGTGAGCAGTGTTATGAGATAATTATCAGTGCCTTGCGATCTCTGAAAGGTGACACCTTGCAGAAGGAATTTGGCTCTCCCATGAATTCAACTGTTTCACAATCTGCCCTTGATCCATCCTCAAGGAAGAAATATATATGTCAAATTGTTCAACTGGGTGTCCAATCTCCAGACAGAATTTTCCATGAGTATCTTTACCAGGCTATGATTGATCTAGGTCTTGAAAATGAATTGCTAGAGTATGGGGGTCCTGACCTGTTGCCATTTTTGCAACATGCTGGTCGTAAACCTATACAAGAGGTTCGTGCTGTCACTGCAACAACTTCTCCAATGGGGCAATCAGGAGCACCAATGTCAACTAATCAAGTCAAGTACTATGAACTTTTGGCACGATATTATGTCTTGAAACGCCAACATATGCTTGCAGCTCATGCACTGCTTAGACTAGCTGAAAGGCGTTCAATTGATGGAGTTCCTACTCTTGAACAGAGGTGTCAATACCTAAGTAATGCAGTTCTACAGGCAAAAAATGCAACTAGTAGTGATGGGTTACTAGGTTCTGGTCGAAGTTCCATTGACAGTGGGTTTCTAGATTTGCTTGAAGGGAAGCTTGCAGTTCTCCGGTTCCAGATAAAAATCAAAGAAGAACTGGAGTCTATGGCTTCTAGGTCTGATGTTTTACCTAGCACGTCAGATTCTGCTGAAAATGGTGTAATCCCTGAGGGTAGTTCTACTGCTGATGCCAATTTTGTAAATGCAACAAGAGAGAAAGCAGAAGAGCTAGCTTCAGACGTTAAGAGTATTACCCAGTTGTATAATGAATATGCCGTTCCCTTTGGGCTCTGGGAGATATGCCTGGAGATGCTCTACTTTGCCAATTATTCTGGTGATACTGACAGCAGCATTGTCAGAGAGACGTGGGCTAGACTTATTGATCAAGCTATATCAAGAGGGGGCATTGCTGAAGCTTGCTCGGTACTAAAGAGGGTTGGGCCCCGCCTTTATCCTGGTGATGGAGCTGTTTTACCACTTGACATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTGAATTCAGGGGTCGAAGCCGTTGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCTGAACCCGTATTGAACGCATATGACCAATTGTTGTCGAATGGAGCTATTTTGCCATCCCCTAGTGTTAGATTACGTATGTTGAGATCGGTTCTAGTGGTGCTTCGAGAGTGGGCAATGTCTGCATATTCACAAAGGATGGGTAGCAGTGCTGCTGGGCATTCCTCCCTGATACTAGGTGGAGGATTCTCATCGGAACGTGCCATCGCTAGCCAAGGAATTCGGGACAAGATCACGAGTGCAGCAAACAGCTTGGTGGGTGTTGCCATGGCCGACGCTCTCTCGCTGATTCCGGCAGCCGTGCTTCGCAACCTTGCTGACAAACTCTACGAGAAGCGTAAAAATGCTGCACTTGATATTGAAGGGATAGTTAAACAGCTTGCTATTGCTGGGGATCATGATAAAATAACGGCGGTTATCAATTTGTTGACTACGGAATTTACCTATTCACCACAAGCTAATCACCGGAAGGGAGGATTGATAGGATTAGCAGCGGCAACGGTTGGGTTGACTTCTGAAGCAGCTCAACATCTTGAGCAAATTGTGCCTCCTGTGTTAAATTCTTTCTCTGACCAAGATAGCAGAGTTCGTTATTATGCTTGCGAAGCACTTTATAACATTGCCAAGGTTGTGAGAGGGGATTTTATTATTTTCTTCAATCAGATCTTTGATGCGCTATGCAAGCTTTCAGCAGACTCAGATGCCAATGTACAAAGTGCTGCTCACCTCTTAGATAGGCTTGTGAAGGATATTGTGACTGAAAGTGATCAGTTCAGTATTGAAGAATTCATACCACTGTTGAGGGAGCGCATGAATGTTTTGAATCCATATGTCCGCCAGTTTTTGGTAGGATGGATTACTGTTTTGGACAGTGTCCCAGATATTGACATGCTGGGGTTTCTTCCCGATTTTCTTGATGGCTTGTTTAATATGTTGAGTGATTCAAGTCATGAAATACGTCAACAAGCTGATTCAGCTCTTTCGGAGTTTCTTCAAGAGATTAAAAACTCCCCATCTGTAGATTATGGTCGCATGGCTGAAATCCTGGTACAGAGAGCTGGTTCTCCTGATGAATTTACTAGGCTAACAGCTATCACATGGATAAATGAGTTTGTCAAGCTTGGTGGAGACCAGCTTGTTCCGTACTATGCTGACATTCTTGGAGCTATTTTACCTTGTATATCAGATAAAGAAGAGAAAATCAGAGTTTTGCAATATCTGAATGACATATTTGACACCCTGCTCAAAGCACTTTCAGATCCATCTGATCAGGTTGTTCTTCTTGTTCTTGATGTTCATGCATGCATAGCAAAAGATCCTCAACATTTTCGGCAACTTGTTGTTTTCCTGATGCACAATTTCCGGGTAGACAATTCCCTTTTGGAGAAACGTGGTGCTTTGATAATTCGCCGGCTTTGTGTGCTTTTGAATGCTGAGAGAGTCTACCGTGAACTTTCCACTATACTAGAAGGGGAGTCTGACCTGGATTTTGCTTCAATTATGGTCCAGGCTCTAAATTTGATATTACTCACATCATCCGAACTGTCCGAGATTCGATATCTTTTGAAGCAATCACTGGTTGATCCTGCTGGGAAGGATTTATATACTTACCAACATGCGAGTGCTGTGATCCAGTCTCTGGTTGAAGAGGATGTTAATGTCAAATTCTTAGTCCAGCTTGATAAATTGATTCGCTTGCTGGAAACTCCAATATTTGCTTATCTAAGATTGCAGCTTCTAGAACCCGGAAGATATCCATGGCTGTTTAAAGCATTGTATGGTCTTCTGATGTTGCTTCCTCAGCAAAGTGCTGCCTTCAAGATTCTCAAAACTCGCTTAAAAGCTGTGCCATCATATTCCTTCAATGGTGAGCAATTGAAAAAAACATCCTCGGGGAATCCCTATAATTTTCTCCATAACATGTCTGGTGGATCTCAAATCAATGAGGATGGTGAAGTAGCTTTGGATCGTGGGAACTCACTTAATGGGATAAATTTTGCTGCAAGGTTACAACAGTTTCAGCAAATGCAGCGCCAGCATCGTGAGGCACAGAGACATGAAGAACCTAAGCAACCTCAGTTGAGTGAGGTTAATGCTGTTGCTCCTTCAAGATCATCTAAAAGAGCCCAGGGTAGCTAG 6234 0.437 MMSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDLEEALEASRYTSHPYSTHPREWPPSVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEFSGEEQAICAVGLAKSKPGVFVEAIQYVLVLATPVELILVGVCCSGGADGSDPFAEVTLQPLPEHTISSDGVTMTCVACTDKGRIFLAGRDGHIYEVLYSTGSGWQKRCRKICMTAGFGSVISRWVIPNVFNFGAVDAIVEMVFDNERQILYARTEEMKIQVYVIGPNGDGPLKKVAEEKNLVNQRDAHYGARQSTGSRVSSRSPKPSIICISPLSTLESKWLHLVALLSDGRRMYLSTSPSSGSLTGFNTNHHKPSCLKVVTTRPAPPWGVSGGLTFGAMALAGRPQNEDLSLKIEASYYSAGTLILSDASSSTMPSLLVLSRDSSTQSLPSGNLGTSTRSSRALRESVSSLPVEGRMLSVADVLPSPDTAATVQSLYSEIEFGGYEGSIESCEKLSGKLWARGDLSTQHILPRRRIVVFSTMGMMEIVFNRPLDILRRLLESNTPRSVLEDFFNRFGAGEAAAMCLMLAARVVHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSNALSNTRSAAGGFSMGQVVQEAEPVFSAAHEGLCLCSSRLLFPLWELPVMVVKGNLGPSGTLSENGVVVCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSTLAADDRNMVRNLFGAYSRNMESNGSRTNNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDSGLQQTLVQLTFHQLVCSEEGDHIATRLISALMEYYTGPDGRGTVDDISRRLRDGCPSYYKESDYKFFLAVEALERAATTIDAEDKENLAREAFNSLSKVPESVDLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAYNDEIDATVREQALAHREQCYEIIISALRSLKGDTLQKEFGSPMNSTVSQSALDPSSRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQHAGRKPIQEVRAVTATTSPMGQSGAPMSTNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSIDGVPTLEQRCQYLSNAVLQAKNATSSDGLLGSGRSSIDSGFLDLLEGKLAVLRFQIKIKEELESMASRSDVLPSTSDSAENGVIPEGSSTADANFVNATREKAEELASDVKSITQLYNEYAVPFGLWEICLEMLYFANYSGDTDSSIVRETWARLIDQAISRGGIAEACSVLKRVGPRLYPGDGAVLPLDIICLHLEKAGLERLNSGVEAVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSPSVRLRMLRSVLVVLREWAMSAYSQRMGSSAAGHSSLILGGGFSSERAIASQGIRDKITSAANSLVGVAMADALSLIPAAVLRNLADKLYEKRKNAALDIEGIVKQLAIAGDHDKITAVINLLTTEFTYSPQANHRKGGLIGLAAATVGLTSEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAGSPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVLQYLNDIFDTLLKALSDPSDQVVLLVLDVHACIAKDPQHFRQLVVFLMHNFRVDNSLLEKRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSSELSEIRYLLKQSLVDPAGKDLYTYQHASAVIQSLVEEDVNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYPWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYSFNGEQLKKTSSGNPYNFLHNMSGGSQINEDGEVALDRGNSLNGINFAARLQQFQQMQRQHREAQRHEEPKQPQLSEVNAVAPSRSSKRAQGS 2077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04135 2077 Pfam Vacuolar 14 Fab1-binding region 1519 1615 - -
Vian1g04135 2077 FunFam Nuclear pore complex protein NUP155 1058 1155 - -
Vian1g04135 2077 Pfam Nup133 N terminal like 55 544 IPR014908 -
Vian1g04135 2077 Gene3D Nucleoporin, helical domain, central subdomain 1058 1155 IPR042537 -
Vian1g04135 2077 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 13 1441 IPR004870 GO:0005643|GO:0006913|GO:0017056
Vian1g04135 2077 FunFam Nuclear pore complex protein NUP155 895 1055 - -
Vian1g04135 2077 FunFam Nuclear pore complex protein NUP155 1181 1417 - -
Vian1g04135 2077 Coils Coil 701 721 - -
Vian1g04135 2077 FunFam protein VAC14 homolog 1580 1703 - -
Vian1g04135 2077 Gene3D - 895 1055 IPR042533 -
Vian1g04135 2077 MobiDBLite consensus disorder prediction 2040 2077 - -
Vian1g04135 2077 FunFam ARM repeat superfamily protein 1460 1579 - -
Vian1g04135 2077 Pfam Vacuolar protein 14 C-terminal Fig4p binding 1824 1890 IPR021841 -
Vian1g04135 2077 Pfam Vacuolar protein 14 C-terminal Fig4p binding 1901 1981 IPR021841 -
Vian1g04135 2077 Gene3D - 1456 1658 IPR011989 -
Vian1g04135 2077 Gene3D - 1662 1874 IPR011989 -
Vian1g04135 2077 Gene3D - 532 884 - -
Vian1g04135 2077 ProSiteProfiles HEAT repeat profile. 1546 1581 IPR021133 -
Vian1g04135 2077 SUPERFAMILY ARM repeat 1432 1933 IPR016024 -
Vian1g04135 2077 Gene3D - 1181 1417 IPR042538 -
Vian1g04135 2077 MobiDBLite consensus disorder prediction 2061 2077 - -
Vian1g04135 2077 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 876 1293 IPR007187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04135 Vian-Chr1 64377776 64396766 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04135 1 64377776 64396766 Vian1g04135 1 64377776 64396766 ECH