Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04134 ATGATGGAGTCAAAGGGTGTGCGGTTCTTAGCGTACCAATCAATATTTTCGAGTGTTGGATCTGGGGACTTTGATGGGGTGAAGAAACTGGTGGAGAAAGTGAAGAACGAAGAAGGGTCATCTCTCTCTGATGTGATGTCTCTTCAGAACGATGCTGGAGAAAGTGCACTTTACATCGCTGCAGAGAATAATCTGCAAGAGATTTTCAGCTACTTGCTCAACTCGTGTGACTTTGAAGCCGTCAAGATTCGCTCCAAGTCTGACATGAACGCCTTTCATGTTGCTGCCAAACGTGGTCATCTAGATATTGTGAGGGAGCTTTTGAGTACTTGGCCTGAGGTCTGCAATTTATGCGACTCCTCAAATACCAGTCCTCTATATTCTGCTGCAGTTCAAGACCACTTGGATGTGGTGAATGCCATCTTGGATGTTGATGTCAGTTCAATGTTTATTGTTAGGAAAAACGGAAAAACTTCGTTGCACAATGCTGCTCGATATGGCGTGGTTCGTATTGTAAAAGCACTTATTGCTCGGGATCCAGGAATTGTATGCATAAAAGATAAAAAAGGTCAAACTGCACTTCATATGGCTGTCAAAGGACAGTGTACTTCAGTGGTGGAGGAGATATTACTTGCTGATTCTTCTATATTGAATGAGCGAGATAAAAAGGGCAATACAGCTCTTCACATGGCTACAAGGAAATGCCGTTCACAGATAGTGATCCTTTTGCTAAGCTATTCTGCCGTGGATGTTAATGCCATCAACAAGCAGCAGGAAACAGCGTTGGATTTGGCAGATAAACTGCCATACGGAGATTCAGCTTTGGAAATCCAAGAAGCACTTGCAGAATACGGAGCGAAGCATGCAAGACATGTTGGACAAGTAGACGAAGCGATGGAGCTTAAAAGAACAGTGAGTGACATAAAACATGAGGTGCAGTCACAACTTATACAAAACGAAACAACTCGTCGACGGGTTTCTGGAATTGCCAAGGAACTGAAGAAACTTCATAGAGAGGCAGTTCAAAACACCATTAATTCTGTCACAGTGGTTGCTGTTCTTTTTGCCTCAATAGCCTTCTTGGCCATCTTCAATTTGCCGGGACAATATCAAGTGCAACCCGGAGAAGAGATTGGAAAAGCTAAGATAGCCGATCATCTTAGTTTCCAAGTTTTTTGCTTTCTGAATTCCACGTCCCTTTTCATTTCTCTTGCAGTTGTCGTAGTTCAAATCACTTTGGTGGCTTGGGACACAAGGGCTCAAAAGCAGCTTGTGTCAGTGGTTAACAAGTTGATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTAGCCATAGCTTTTGAGGTTGTTGGAGGGAAAACGTGGATGGCTATCACCATAACCCTTTTGGGAGTACCTATTCTAGTAGGGACTCTGTTAAGCATGTCCTACTTTGTTTTTCGACAACATTTCGGTATTTTCCGCAGTGATTCCCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCTTTTTCATGGTCTTACTCTGCAAATATATCAGACTTGGATGAATACGATTCTGACATTGAGAAGATCTATGCACTGTGA 1590 0.4314 MMESKGVRFLAYQSIFSSVGSGDFDGVKKLVEKVKNEEGSSLSDVMSLQNDAGESALYIAAENNLQEIFSYLLNSCDFEAVKIRSKSDMNAFHVAAKRGHLDIVRELLSTWPEVCNLCDSSNTSPLYSAAVQDHLDVVNAILDVDVSSMFIVRKNGKTSLHNAARYGVVRIVKALIARDPGIVCIKDKKGQTALHMAVKGQCTSVVEEILLADSSILNERDKKGNTALHMATRKCRSQIVILLLSYSAVDVNAINKQQETALDLADKLPYGDSALEIQEALAEYGAKHARHVGQVDEAMELKRTVSDIKHEVQSQLIQNETTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYQVQPGEEIGKAKIADHLSFQVFCFLNSTSLFISLAVVVVQITLVAWDTRAQKQLVSVVNKLMWAACACTCGAFLAIAFEVVGGKTWMAITITLLGVPILVGTLLSMSYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSANISDLDEYDSDIEKIYAL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04134 529 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 22 508 - -
Vian1g04134 529 Pfam Ankyrin repeats (3 copies) 187 253 IPR002110 GO:0005515
Vian1g04134 529 Pfam Ankyrin repeats (3 copies) 87 143 IPR002110 GO:0005515
Vian1g04134 529 SUPERFAMILY Ankyrin repeat 15 286 IPR036770 -
Vian1g04134 529 Gene3D - 11 307 IPR036770 -
Vian1g04134 529 ProSiteProfiles Ankyrin repeat profile. 155 176 IPR002110 GO:0005515
Vian1g04134 529 Pfam Domain of unknown function 339 447 IPR026961 -
Vian1g04134 529 ProSiteProfiles Ankyrin repeat profile. 189 222 IPR002110 GO:0005515
Vian1g04134 529 ProSiteProfiles Ankyrin repeat region circular profile. 155 176 - -
Vian1g04134 529 ProSiteProfiles Ankyrin repeat region circular profile. 223 248 - -
Vian1g04134 529 ProSiteProfiles Ankyrin repeat profile. 223 256 IPR002110 GO:0005515
Vian1g04134 529 SMART ANK_2a 155 184 IPR002110 GO:0005515
Vian1g04134 529 SMART ANK_2a 52 80 IPR002110 GO:0005515
Vian1g04134 529 SMART ANK_2a 223 253 IPR002110 GO:0005515
Vian1g04134 529 SMART ANK_2a 121 151 IPR002110 GO:0005515
Vian1g04134 529 SMART ANK_2a 87 116 IPR002110 GO:0005515
Vian1g04134 529 SMART ANK_2a 189 218 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04134 Vian-Chr1 64374523 64376805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04134 2 529 Miscellaneous Gene Families AT2G01680 68.773 0.0 722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04134 1 64374523 64376805 Vian1g04134 1 64374523 64376805 ECH