Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04133 ATGTTTGCTTGTCGCAGAGATTTTAGGAACATGTGCAAACCATTTTCTATTGTGCTGATTGCAGATACACCGAGAATCAATCCTCAAAGCTCCCTACTCGTGAAACTCGATCGCAGAAAGAGCAAGGAGGTGGACAACATGATCCGGGAGGTGGACGGGGACGGTGACGGGTGCATCAACCTGCACGACGGAGGAGCTGAACACGTCATTTCTAAATTTAGGATTCAGATCTTCATGTATACAAATATACATCTTCTTTGCCGCAGGGAAGCCGAAGAGGATTGGGTTATGGCCACTTCGAAGACGGTGATGTTGGCCAAGGAACCAATTCCACAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTTTGGTGGCCGTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCACTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTGAAGCGTGCCTTAGCGAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCCTTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGGATTCACATACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCGATACCATGAAGATGCAAGTTGTGGCTGAGACAGCCATCAAAGAAGATGATCCTCTGTTACTTTGCTACGGCTGTTTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATTCACTCAAACCCTTTTGATTGTATCGAGCTCAAATATGATGGCGCTCTTTTGGATGCTGCAAGCACTGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCATGGCAGGAACTGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGAGTAGTCCTTTCGAGTAATGTGGAAACTGTGCAGAAGTATGATCTCAGTACACTAAAGTCTTTGGATGTTGAGGCTCCTCTCGGTGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATCGCACTGGAACACTTTCCGACCAAAATAATGGATGATGAATCTCTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGATTTATGTTATTATTCTCCCATGA 1416 0.4421 MFACRRDFRNMCKPFSIVLIADTPRINPQSSLLVKLDRRKSKEVDNMIREVDGDGDGCINLHDGGAEHVISKFRIQIFMYTNIHLLCRREAEEDWVMATSKTVMLAKEPIPQELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALASVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRIHIPMMLPLIDMCNHSFNPNARIVQEEDTDTMKMQVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVIHSNPFDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQELILSQLNLSGETPDLKVSLGGQETVEGRLVAALRVVLSSNVETVQKYDLSTLKSLDVEAPLGVANDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQYRIQKKCVIIDVMKNLSRRIYVIILP 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04133 471 CDD SET_LSMT 85 297 - -
Vian1g04133 471 SUPERFAMILY SET domain 114 301 IPR046341 -
Vian1g04133 471 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 293 465 IPR036464 -
Vian1g04133 471 Gene3D set domain protein methyltransferase, domain 1 84 296 - -
Vian1g04133 471 FunFam Histone-lysine N-methyltransferase setd3 5 296 - -
Vian1g04133 471 Gene3D - 334 465 IPR036464 -
Vian1g04133 471 Pfam SET domain 85 283 IPR001214 GO:0005515
Vian1g04133 471 ProSiteProfiles SET domain profile. 93 283 IPR001214 GO:0005515
Vian1g04133 471 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 99 439 - -
Vian1g04133 471 Pfam Rubisco LSMT substrate-binding 332 453 IPR015353 -
Vian1g04133 471 FunFam SET domain containing protein 319 470 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian1g04133 SET 1.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04133 1 64362051 64368020 Vian1g04133 1 64362051 64368020 ECH