Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04121 ATGGAGAGAGATTTCATGGGTCTCAACTCGAAAGAACCACCCACTGCGGTGAAGGAGGAGATCAACGTTGATGGCTACGAAGGCTCTGGATTCACAAAGGGTTCCATTGCACAGTGGCCTTTCTCGAACAAAGTATCCGCTATTCCACATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATGTTGTCTGGTCCCATAACAGCTGGTCTTTTATCTATCTTAAGTCAAGATGCAATTGAGTCTAGTCACAAACGCTCTTCCGGTGACACCCAGAAATCTTTCAATCACGATGGGCAAGGTGGTCATCATTTTTCGCTGACTCCATTTCCAGTACAACATGATGTGAATTCTGTGCATCGTCCTCATGATGTGAAGATGTTTTCGGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGAATCCATTCCTGAATAATCATTTTGCAACTGGTGGCCAGAATATGAATGGCACTAGTGTGAAGCAGCCATTCCTTGGGGGAATACCTGTTTCTGTGCCCCATTTAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGGGTGAACCATGTATGAGACCATCTCCGCCTTCTGCCCAGCTTACCATCTTCTATGGGGGAACTGTCAAAGTCTTTGATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGCAGTAGCGTATCTGTAGCTCCTAGCATGGTCCAGCCAAAAGTTCACGTGCCGAAGTTGGCTGCTGGCGACGGTGTGCCTGTGCCTGCGACTCAGCCGGCAAATACGCCACCCGGCTCTGGCCTTTCAAGCCCTATTTCTGTTTCTTCACATACTGGAGCACAGTCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCTAAAACAACTGGAGTTCCCACCACTCCTGTTAGCAATGTGGAGCCTCCAAAGGTAGTCAGTGCAGCCACTATGTTGACATCAGCTGTACCTCAGGCTCGAAAAGCATCCTTGGCTAGATTTTTAGAAAAGCGCAAAGAAAGGGTGACGAGTGCAGCACCATACAACCTTAACAGGAAGTCTGAAGAGTGTGGCCCTGCAGAATTTGCTGGTGCCATGTTTTCTGCAGGTGCTGCGACCAGTACTGTTTCGGCAATGCAAGGATAG 1158 0.4775 MERDFMGLNSKEPPTAVKEEINVDGYEGSGFTKGSIAQWPFSNKVSAIPHLMSFKASQDDKTKKMLSGPITAGLLSILSQDAIESSHKRSSGDTQKSFNHDGQGGHHFSLTPFPVQHDVNSVHRPHDVKMFSVPNQAISVSMGNPFLNNHFATGGQNMNGTSVKQPFLGGIPVSVPHLVIPNAGAVAGMGEPCMRPSPPSAQLTIFYGGTVKVFDDISAEKAQAIMLLAGSSVSVAPSMVQPKVHVPKLAAGDGVPVPATQPANTPPGSGLSSPISVSSHTGAQSGSGSTSTDEFLAAKTTGVPTTPVSNVEPPKVVSAATMLTSAVPQARKASLARFLEKRKERVTSAAPYNLNRKSEECGPAEFAGAMFSAGAATSTVSAMQG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04121 385 SMART tify_2 196 231 IPR010399 -
Vian1g04121 385 MobiDBLite consensus disorder prediction 252 294 - -
Vian1g04121 385 Pfam tify domain 197 230 IPR010399 -
Vian1g04121 385 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 103 358 IPR040390 -
Vian1g04121 385 MobiDBLite consensus disorder prediction 264 294 - -
Vian1g04121 385 ProSiteProfiles Tify domain profile. 196 231 IPR010399 -
Vian1g04121 385 MobiDBLite consensus disorder prediction 85 112 - -
Vian1g04121 385 Pfam Jas motif 328 352 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04121 Vian-Chr1 64230118 64233165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04121 38 361 Tify Gene Family AT3G17860 34.203 3.21e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian1g04121 tify 2e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04121 1 64230118 64233165 Vian1g04121 1 64230118 64233165 ECH