Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01790 ATGTCAACTTTGAGCATACCTCCAGTGATACCATCACCTCGAGAAGATGCTGTCAAGCTGCATAAAGCTTTCAAAGGTCTTGGTTGTGACACGTCTAAAGTTATCAACATCTTAGCTCATAGAAATGGAGAACAACGAAGTCTAATTCAACAAGAATATGAAACCACCTTCTCTGAACTGCTTTCCAAACGTTTATCAAAAGAACTTCATGGCCATCTCAAGAAAGCAATGTCACTATGGCTGCATGATCCTCCAACCAGGGATGCTAAGATAGTGAGAAAAGCCTTAAGACCAGGAGTTTCTGATAATCAAGCATTAACAGAAAGTATATGTTCTCGCACTCCATCACAACTTAGACGATTAAAAGAAGTTTATCAGTCAAATTATCATTCCTCTCTTGAGACAGATATTGAAATCCAACTCAGTGGTGATCATAAAAAGTTGTTGCTTGCATATGTAACTACACCACGTTATGAAGGCCCAGAGTTGGACCCTGTGATTGTAGAAGAAGACGCAAAACTACTGTATAAAGCAGGGGAGAAAAAGATAGGAACTGATGAGGAGATGTTCATCAAGATTTTTAGTGAGAAAAGTAGCACACATTTGGCTGCTGTTAACTCAGCTTACATAGCTTCACATGGACACTCACTTGAAAAGATCTTGCGCAGGTCAATGAAGGGTGTGGGAACTCAAGATAGTAGACTAATAAGGGTAGTTGTGACAAGGACGGAGATAGACATGTACCATATAAAAATAGCATATTATAAGAAATATGGAAAACCATTAACCCATGCTGTTCGTTCTGACACATCAGGCCATTACAAAGAATTTCTCTTGAGTCTTATAGGTTCTGATTATTAG 861 0.3879 MSTLSIPPVIPSPREDAVKLHKAFKGLGCDTSKVINILAHRNGEQRSLIQQEYETTFSELLSKRLSKELHGHLKKAMSLWLHDPPTRDAKIVRKALRPGVSDNQALTESICSRTPSQLRRLKEVYQSNYHSSLETDIEIQLSGDHKKLLLAYVTTPRYEGPELDPVIVEEDAKLLYKAGEKKIGTDEEMFIKIFSEKSSTHLAAVNSAYIASHGHSLEKILRRSMKGVGTQDSRLIRVVVTRTEIDMYHIKIAYYKKYGKPLTHAVRSDTSGHYKEFLLSLIGSDY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01790 286 Pfam Annexin 16 77 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 Pfam Annexin 171 219 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 Pfam Annexin 87 151 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 Pfam Annexin 220 281 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 SUPERFAMILY Annexin 2 285 IPR037104 GO:0005509|GO:0005544
Vian10g01790 286 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 SMART annex3 184 228 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 SMART annex3 101 152 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 SMART annex3 229 281 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Vian10g01790 286 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Vian10g01790 286 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Vian10g01790 286 PRINTS Annexin family signature 175 201 IPR001464 GO:0005509|GO:0005544
Vian10g01790 286 ProSitePatterns Annexin repeat signature. 229 281 IPR018252 GO:0005509|GO:0005544
Vian10g01790 286 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Vian10g01790 286 FunFam Annexin 1 82 - -
Vian10g01790 286 Gene3D Annexin 157 223 IPR037104 GO:0005509|GO:0005544
Vian10g01790 286 ProSiteProfiles Annexin repeat profile. 212 283 IPR018502 GO:0005509|GO:0005544
Vian10g01790 286 PANTHER ANNEXIN 219 281 - -
Vian10g01790 286 FunFam Annexin 217 284 - -
Vian10g01790 286 Gene3D Annexin 224 285 IPR037104 GO:0005509|GO:0005544
Vian10g01790 286 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01790 Vian-Chr10 29728212 29732003 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01790 10 29728212 29732003 Vian10g01790 10 29728212 29732003 ECH