Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01784 ATGGGAGGTGGTCACATGGGGTGGTTCCTCTTGTGTTCTTCTCTGCTTTTTTTTGCTGTGATTGCTTCATCTGGGTCACTCGCAAACTTGCCCATCATAGCCTTTGAGGATGGCTACACCCCCTTGTTTGGGGACCATAATTTGGCCATCCATAGAGATGGAAAATCAGTTCACCTTTCTCTTGATGAAAGAACAGGTTCTGGGTTTGTGTCTCATGACCTTTACCTTCATGGCTACTTCAGTGCCTCGATTAAGTTGCCTTCTGATTACACAGCTGGAGTTGTGGTTGCATTTTATATGTCAAATGGTGACATGTTCGAGAAGAACCATGATGAGATAGACTTTGAGTTTCTGGGGAACATTAGAGGCAAAGACTGGAGGGTTCAGACCAATGTTTATGGCAATGGAAGTACCAACATTGGTAGAGAGGAAAGATGTGGCCTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTCTGGACTGATTCTAAGATCGTATTTTTCGTGGATGATGTTCCTATCAGGGAAGTTATTAGAACAGAATCAATGGGAGGAGATTTCCCCACAAAGCCAATGACTTTGTATGCCACCATATGGGATGCATCTGATTGGGCAACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTATATTGCTGAGTTCTCAGACCTTGTTCTGCATGGCTGTGCAGTTGATCCTATTGAGCATGTGACCAAGTGTGACAGTAGTGACCAAGATTCTGAGGGCGTTCCTTTTGGCATCACCCCAGTACAAAGAACCAAAATGGGCAACTTCAGGTTGAAGCACATGACATACTCTTACTGCTATGATACAGTTAGATACAAAGTCCCTCCACCAGAGTGTGTCATCAAACCCCAAGAAGCTGAAAGGCTTAGAAAGTTTGATCCCATCACCTTCGGCAACGGCCGGCGCCACCGTGGAAAACGACACCACCGTAGTAGAGGTAGTCAGGAAGAGGCTGCCTCTTCATTTTAA 1014 0.4487 MGGGHMGWFLLCSSLLFFAVIASSGSLANLPIIAFEDGYTPLFGDHNLAIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPSDYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRVQTNVYGNGSTNIGREERCGLWFDPAEDFHQYSILWTDSKIVFFVDDVPIREVIRTESMGGDFPTKPMTLYATIWDASDWATNGGKYRVNYKYAPYIAEFSDLVLHGCAVDPIEHVTKCDSSDQDSEGVPFGITPVQRTKMGNFRLKHMTYSYCYDTVRYKVPPPECVIKPQEAERLRKFDPITFGNGRRHRGKRHHRSRGSQEEAASSF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01784 337 FunFam Xyloglucan endotransglucosylase/hydrolase 23 296 - -
Vian10g01784 337 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 259 294 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vian10g01784 337 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 297 IPR013320 -
Vian10g01784 337 CDD GH16_XET 33 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian10g01784 337 MobiDBLite consensus disorder prediction 307 337 - -
Vian10g01784 337 Pfam Glycosyl hydrolases family 16 37 219 IPR000757 GO:0004553|GO:0005975
Vian10g01784 337 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 34 294 IPR044791 GO:0004553
Vian10g01784 337 PIRSF EndGlu_transf 5 299 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian10g01784 337 Gene3D - 23 294 - -
Vian10g01784 337 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 25 227 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01784 Vian-Chr10 29644794 29647284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01784 11 336 Glycoside Hydrolase AT2G01850 67.890 2.12e-164 460
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01784 10 29644794 29647284 Vian10g01784 10 29644794 29647284 ECH