Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01776 ATGGGTCTTAGTTTGAAGATGCAGAGCCACCATCCTGTGGCTTTGAGGTTGTATGATCAAATGGGGTCTAAAAGAAAGTACACTTTCATTCAGGCTCATAGAGCTTGGCTTCCAAAGTTCTTGCTGCTGTGGATCCTTCTAATGGCTTTGATAAGTTGGTGCATCTTTAGCAAAATGGATGATGACACTAAAGTCAGAAGGAAGGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTACAGGATCAGTTTAGTGTTAGTGTTAACCATGTCCATGCCCTTGCCATCCTCGTTTCAACCTTCCATTACTACAGATACCCTTCTGCCATTGACCAGGAAACCTTTGCCGAGTATACAGCCCGGACAGCATTTGAACGGCCATTACTGAGTGGTGTGGCATATGCACAAAGAGTTGTTAAATCTGAGAGAGAGAGATTTGAGAAAGAACATGGATGGGTTATAAAGACAATGGAAGAGAAGTCTTCACTGGTTAGAGATGAGTATGCCCCGGTGATATTTGCACAAGAAACTCTCTCATATCTTGAGTCTCTTGATATGATGTCTGGACAGGAGGACCGAGAAAACATTTTAAGGGCTAGAGCCACTGGGAAAGCAGTTCTGACGAGCCCTTTCAGGCTGTTGGGTTCTCACCATCTTGGTGTGGTTTTAACATTTCCTGTGTACAAGTCCAAGCTCCCTCAGAAGCCAACAGTGGAAGAACGCATCGAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTTGAGAATTTACTTGGACAACTTGCTGGTAACCAAGCAATCTTGGTGAATGTATATGATATCACAAACTATACTAATCCACTAATAATGTATGGAAAGCCCTATGAAGAAGGTGATATGTCTCTTGCCCATGAAAGCAAGCTTGATTTTGGAGACCCATTCAGGAAACATCAAATGATATGTAGGTACCATCAGAAGGCACCAACAAATTGGATTGCTGTTACCACGGCATTTCTATTCTTTGTGATTCTTATATTAGTGGGGTACATTTTATATGGTGCTGGAAATCATATTGTCAAAGTGGAAGATGATTTCCATGAAATGCAGGAACTGAAAGTTCGAGCAGAATCAGCCCACGTTGCCAAGTCCCAGTTTCTAGCTACGGTCTCTCATGAAATTAGAACACCCATGAATGGTATCTTAGGAATGCTTGCTCTGCTTCTAGATACAGAATTGAGTTCAACCCAACGGGATTATGCTCAGACTGCTCAGGCATGTGGAAAGGCACTGATAACATTAATAAATGAGGTGCTGGACAGAGCTAAAATCGAAGCTGGCAAGTTAGAGCTGGAGGCTGTTCCATTTGATCTTCGTTCCATACTTGATGATGTTCTTTCCCTTTTCTCTGAGAAATCTAGACACAAAGGTTTAGAGCTGGCTGTGTTTGTTTCTGATAAAGTACCGGATATTGTCATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAATTCTGTAAAATTCACTGAACACGGACATATATTTGTCAAAGTCCATCTAGGGGACAATAGAAAGTGCATAATGAATGGAAAACATGAGACTTTTCTGAATGGAGAATCAGATGAAGTTTTCCTTATATCTGATGATTATCATTTCAAAACCTTAAGTGGACGTGAAGCAGCTGACGAACGGAACAGCTGGGATAATTTTAAGCTCCTAATTGGTGATGAAAAATGTTGCCTTGATTCTTCAAGAGAAATGGTGGCTACTTGTGAAACATCTGAACAAGTCACATTGAGGGTGTGTGTGGAAGACACAGGAATTGGAATCCCTTTTTCAGCTCAGGATAGGATATTCATGCCTTTTGTGCAGGCTGACAGCTCAACTTCACGAAATTATGGGGGTACTGGTATTGGCTTGAGTATCAGCAAATGTCTGGTTGAACTGATGGGTGGTAAGATAAACTTCATAAGCCGACCCCAGATTGGGAGCACTTTCTCGTTTACTGCAGTTTGTGGAAGATTTAAGAAAGGTCCGGTTACTGACATGAAGAAAAATTTGGAAGATCTTCCTTCAAGTTTTAGAGGGCTGAAAGTCATCGTTGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGTATACTAGTTAAGGTTGAAAATAGCATCAGTAAGGCTGTTGCTTTATATGGTAAAAGTGGTTCTCTGGACTCAGGAATGTTCCTGCCAGATATTATCATGGTTGAGAAGGACACGTGGATATCTGGAGAAGATGGGATTTTCAATATGTGGAAACAGAATGGTCACATGTTTAAGATACCTAAAATGATCCTTCTGGCAACCAATATTAGTAACATTGAATTTGATAAAGCGAAGGCCATGGGTTTCACTGATACTGTGATCATGAAGCCCCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTTTGGGGATGGGGAAGAAGAGGCAGCTAGGGAAAGACATGCCGAATGGTTCTGCTTTTCTACACAGCCTTCTCTATGGAAAGAAAATCTTGGTGGTTGATGACAATGGGGTAAACCGAAGGGTTGCTGCAGGTGCTCTGAAAAAGTTTGGAGCTGATGTGAAGTGTGCAGAAAGTGGCAAAGCAGCACTTGAAATGCTGCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGATGGATTTCAAGCAACTAGCCAAATTCGGATGATGGAGAGCAAGGCAAATGAGGAGATGAAGAATGGGAGTGAGTGGCATGTGCCTATATTGGCCATGACAGCTGATGTGATCCATGCTACATATGATGAGTGCTTGAAACGTGGCATGGATGGATATGTATCAAAGCCATTCGAGGAAGAGAATCTGTATCAGGAAGTTGCAAAGTTTTTCAAAACAAAGACCATCTCAGACTCATAA 2973 0.4205 MGLSLKMQSHHPVALRLYDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIFSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVKSERERFEKEHGWVIKTMEEKSSLVRDEYAPVIFAQETLSYLESLDMMSGQEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNYTNPLIMYGKPYEEGDMSLAHESKLDFGDPFRKHQMICRYHQKAPTNWIAVTTAFLFFVILILVGYILYGAGNHIVKVEDDFHEMQELKVRAESAHVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEHGHIFVKVHLGDNRKCIMNGKHETFLNGESDEVFLISDDYHFKTLSGREAADERNSWDNFKLLIGDEKCCLDSSREMVATCETSEQVTLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGKINFISRPQIGSTFSFTAVCGRFKKGPVTDMKKNLEDLPSSFRGLKVIVVDGKPVRAAVTRYHLKRLGILVKVENSISKAVALYGKSGSLDSGMFLPDIIMVEKDTWISGEDGIFNMWKQNGHMFKIPKMILLATNISNIEFDKAKAMGFTDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGSAFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFQATSQIRMMESKANEEMKNGSEWHVPILAMTADVIHATYDECLKRGMDGYVSKPFEEENLYQEVAKFFKTKTISDS 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01776 990 Gene3D - 59 111 - -
Vian10g01776 990 SMART HKATPase_4 493 678 IPR003594 -
Vian10g01776 990 FunFam Histidine kinase 4 112 327 - -
Vian10g01776 990 Pfam CHASE domain 111 291 IPR006189 -
Vian10g01776 990 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Vian10g01776 990 ProSiteProfiles Response regulatory domain profile. 855 982 IPR001789 GO:0000160
Vian10g01776 990 SMART REC_2 854 978 IPR001789 GO:0000160
Vian10g01776 990 Gene3D - 355 444 - -
Vian10g01776 990 PANTHER TWO-COMPONENT HISTIDINE KINASE 28 979 - -
Vian10g01776 990 SUPERFAMILY CheY-like 853 982 IPR011006 -
Vian10g01776 990 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Vian10g01776 990 SUPERFAMILY CheY-like 697 829 IPR011006 -
Vian10g01776 990 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Vian10g01776 990 ProSiteProfiles Response regulatory domain profile. 702 828 IPR001789 GO:0000160
Vian10g01776 990 ProSiteProfiles Histidine kinase domain profile. 388 673 IPR005467 -
Vian10g01776 990 Gene3D - 849 989 - -
Vian10g01776 990 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Vian10g01776 990 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 673 IPR036890 -
Vian10g01776 990 Gene3D CHASE domain 112 327 IPR042240 -
Vian10g01776 990 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 674 IPR003594 -
Vian10g01776 990 SMART CHASE_2 108 293 IPR006189 -
Vian10g01776 990 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Vian10g01776 990 Gene3D - 445 677 IPR036890 -
Vian10g01776 990 CDD REC_hyHK_CKI1_RcsC-like 856 978 - -
Vian10g01776 990 Pfam Response regulator receiver domain 856 978 IPR001789 GO:0000160
Vian10g01776 990 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
Vian10g01776 990 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Vian10g01776 990 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Vian10g01776 990 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Vian10g01776 990 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Vian10g01776 990 FunFam Histidine kinase 4 353 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01776 Vian-Chr10 29550456 29555978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01776 11 990 Histidine Kinase Gene Family AT2G01830 70.571 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian10g01776 HATPase_c 5.4e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01776 10 29550456 29555978 Vian10g01776 10 29550456 29555978 ECH