Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01645 ATGTCAGTCTCCATCCCACTCAAGTCATCAAAACTTGTGTCATGGAAACCTGTTCGTGTTAATGTTTCTTATTACTGTTTGGTCCCAAATGCTTCAACGATCCACAAACGTAGTTTCTGTTACACTAACCTCTTCCACGCGCTTTTGCAGACGGGGCGTCTTCAGCAAACCCTAGCGGGATGCGTAGAGAGGAACGGCGTGGGTCTGCATTCGGGGAAGCTTTCGTCGGTGAGGCTGTGGCCGGAGCTCGCTTCCCGAGGCAGGTACTTCGAATTTCGTTGCCGTTCGATTCCCGCCGCCGTCGAGTTCGCTCAGGTCTCGCCGCTGTGCACCTCTCTGAGCAAGGACGGGTTCCGAATTCGAACCGTGGAGCATTTACTTTCGGCTTTGGAGGCTTCGGGTGTTGATAACTGCAGGATTGAGATTGAGGGTTTTGATGATAAAGAGATCGACGCCGAGATTCCTATATTTGATGGGTCAGCAAGGACATGGGTGGAAGCAGTGGAAGAAGTTGGTTTAGCGGTGGCCACTGACCTTGATGGCAATAGTGTTGAGAAAATGGCACCACATGTGAACGAACCGGTGTGTGCTTGGAGAAATGATTCTTTTGTCGCTGCATTTCCTTCTCCAGCGGTTCAAATAACTTATGGCATCGATTATCCGCAGGCACCTGTTATTGGCCGCCAATGGTTTTCTATTTACCCCTTGGATAATTTGGTTTATTCCACGGAGATAGCTTTGTCAAGAACCTTCTGCATTTATGAGGAGATTGAGCCTATGCGCAATGCTGGACTTATCAAAGGAGGTTCTCTAGAGAATGCCATTGTATGCAGTGCCAGTAAAGGTTGGTTGAATCCACCTCTGCATTTCAGAGAGGAACCTTGTCGTCACAAGATCTTAGACCTCATTGGTGATCTCTCGATGGTTGCTCAATCGGGGAATCAAGGACTCCCAGTAGCACACATCGTAGCTTACAAGGGTGGCCATGCATTGCATGCTGATTTGGCACGCCGCCTGATAATGAGTTGA 1029 0.4908 MSVSIPLKSSKLVSWKPVRVNVSYYCLVPNASTIHKRSFCYTNLFHALLQTGRLQQTLAGCVERNGVGLHSGKLSSVRLWPELASRGRYFEFRCRSIPAAVEFAQVSPLCTSLSKDGFRIRTVEHLLSALEASGVDNCRIEIEGFDDKEIDAEIPIFDGSARTWVEAVEEVGLAVATDLDGNSVEKMAPHVNEPVCAWRNDSFVAAFPSPAVQITYGIDYPQAPVIGRQWFSIYPLDNLVYSTEIALSRTFCIYEEIEPMRNAGLIKGGSLENAIVCSASKGWLNPPLHFREEPCRHKILDLIGDLSMVAQSGNQGLPVAHIVAYKGGHALHADLARRLIMS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01645 342 Gene3D lpxc deacetylase, domain 1 53 178 IPR015870 GO:0008759|GO:0009245
Vian10g01645 342 SUPERFAMILY Ribosomal protein S5 domain 2-like 54 174 IPR020568 -
Vian10g01645 342 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 9 340 IPR004463 GO:0008759|GO:0009245
Vian10g01645 342 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 55 340 IPR004463 GO:0008759|GO:0009245
Vian10g01645 342 SUPERFAMILY Ribosomal protein S5 domain 2-like 193 340 IPR020568 -
Vian10g01645 342 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 55 340 IPR004463 GO:0008759|GO:0009245
Vian10g01645 342 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 53 342 IPR004463 GO:0008759|GO:0009245
Vian10g01645 342 Gene3D lpxc deacetylase, domain 2 190 342 IPR011334 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01645 47 341 Carbohydrate Esterase AT1G25054 65.085 1.59e-141 402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01645 10 27562238 27566923 Vian10g01645 10 27562238 27566923 ECH