Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01630 ATGGAGAGGGATTTTATGGGTCTGAACTCGAAGGAACCCTTCGTTGAAGTGAAGGAAGTGATGAATAATGATAGTGGGTGCAAAAACTCAGGTTTCACAAAAGGAGGTATGGTAAAATGGCCCTTCATGAACAAAGTATCTGTCCATCCTCAGTCGATGTCTTTGAATACTCCTCAGAAATCTGTCAATCATGATGAACAAGGTGGTGGCATTCATTTTTCCCTGACTCCTTATCCTACACTACATGATGTGAATTATATGAACCGTCCTCATAATGTGAAGATGTTTCCAGTTCCCAACCAAGCAATTCCAGTTTCCATGGGACCTCTATCCCTAAAGAATCCTTTTGCAACTGTTGGTCAGAATATGAATGCTTCTAGTATGAAGCAACCACAACTAGGGGAAATACCTGTTACAGCACTCCATTCATTTCTTCCTCTAGTTGGTGTTGGTGCTGTTGCTGGAATGACCGAATCATGTGTGAAACCATCTGTATCTGTTCCTAAACTTACCATCTTCTATGCTGGAACTGTGAATGTCTTTGATGATATCACTCCTGAGAAGGCTCAAGCAATCATGTTGATGGCTAGGAATGGCTTATCACTTGCTTCTAAAGTGACAGTACCTAATGTTCAGGCACCCAGACATAGTAAACCCATACCACTTTCAAGTACTTTATCTGTTTCTTCACATACTGGTGCAAAATCAGGGAGTGTTTCAAGTAGCAGTAATGAATTTCTGGCAGCTAAAACATCTGGTGGTACCCTTACTTCTGTTAACAAAGCAGAGACTCCTAAAGTAGTCAACACAAACACCATGCTGCCATCAGCTGTGCCACAAGCTCGCAAGGCATCACTGACTCGATTTTTACATAAGCGCAAGGAGAGGGTATTGAGTGCAGCACCATATAACCTGAACAAGAAGTATGAGAATATGTCAGAACAGAATGCAACTGTTTCTAACATCAGTTCAAGTGAGGGTGTAACCAAGCAAGGATAG 999 0.4174 MERDFMGLNSKEPFVEVKEVMNNDSGCKNSGFTKGGMVKWPFMNKVSVHPQSMSLNTPQKSVNHDEQGGGIHFSLTPYPTLHDVNYMNRPHNVKMFPVPNQAIPVSMGPLSLKNPFATVGQNMNASSMKQPQLGEIPVTALHSFLPLVGVGAVAGMTESCVKPSVSVPKLTIFYAGTVNVFDDITPEKAQAIMLMARNGLSLASKVTVPNVQAPRHSKPIPLSSTLSVSSHTGAKSGSVSSSSNEFLAAKTSGGTLTSVNKAETPKVVNTNTMLPSAVPQARKASLTRFLHKRKERVLSAAPYNLNKKYENMSEQNATVSNISSSEGVTKQG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01630 332 Pfam Jas motif 279 303 IPR018467 -
Vian10g01630 332 ProSiteProfiles Tify domain profile. 163 198 IPR010399 -
Vian10g01630 332 Pfam tify domain 169 196 IPR010399 -
Vian10g01630 332 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 117 311 IPR040390 -
Vian10g01630 332 SMART tify_2 163 198 IPR010399 -
Vian10g01630 332 MobiDBLite consensus disorder prediction 213 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01630 Vian-Chr10 27373313 27376153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01630 38 308 Tify Gene Family AT3G17860 36.656 3.56e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian10g01630 tify 1e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01630 10 27373313 27376153 Vian10g01630 10 27373313 27376153 ECH