Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02117 ATGGAAGCTAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAAAAGATGAGAAGGAACAACACAGTAGAAGAAGAAGTGGAAAATGAAGTAGAAGAAGAGGATGGTGATTTTAGTCTGactgaagaagagaaaaagaaaggggCTGGTGGCGGAAGAagaagtggtggtggtggtggtgtttcTCCGCCTTCTTGCCAAGCAGAGAGGTGTGGAGCTGATTTGACTGATGCAAAGAGATACCATCGTCGCCATAAGGTGTGTGAGTTTCATTCTAAGGCACCTGTTGTGGTGGTTTCTGGGCTGAGGCAGAGATTTTGCCAACAATGTAGCAGGTTCCATGACCTAGCAGAGTTCGATGAATCTAAAAGAAGCTGTCGCAGGCGGTTGGCTGGACACAATGAAAGGCGCAGGAAAACCAACCTGGAAACTGCCAATGAGGGCAGCAGCCACAGTAAAGGACAACAACATCAACCTAAGGAAACACAGTGCAGAATTCAGATGAACTTACCAGGGAGTTCTGGCTACAAGTCATTCAATATTAGGTGA 549 0.4171 MEARSIERKRTLMMEKMRRNNTVEEEVENEVEEEDGDFSLTEEEKKKGAGGGRRSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVSGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNLETANEGSSHSKGQQHQPKETQCRIQMNLPGSSGYKSFNIR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02117 182 Pfam SBP domain 66 139 IPR004333 GO:0003677
Tsu08g02117 182 MobiDBLite consensus disorder prediction 1 25 - -
Tsu08g02117 182 MobiDBLite consensus disorder prediction 1 68 - -
Tsu08g02117 182 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Tsu08g02117 182 MobiDBLite consensus disorder prediction 130 182 - -
Tsu08g02117 182 MobiDBLite consensus disorder prediction 145 182 - -
Tsu08g02117 182 Coils Coil 13 34 - -
Tsu08g02117 182 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 160 - -
Tsu08g02117 182 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Tsu08g02117 182 Gene3D - 57 127 IPR036893 GO:0003677|GO:0005634
Tsu08g02117 182 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 160 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02117 Tsu-Chr8 28560543 28561829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02117 1 182 SBP-box Gene Family AT3G15270 47.059 6.56e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu08g02117 SBP 9.1e-32 No_clan