Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02050 ATGGAAACTCCGTCTTCAGATGGATCTGTTTCGAGGTATTCATTGAGAAAGAAAGTTAATTCTAGGAATTATAATAATGTtttgatggatgatgatgaccTTTTTGATGATAAGTTGGATACtagtttgaagaagaagaacaagtcCCAAGAAGATCTGCAGAAAGAGACTAACACCGAGTCTATGATTGCCTTTTCGCTCGGTTTCCCTATTAATGTTTTGCTTGAGAGTGAGATTCGTGCTGGGGTTGTTCGAGAATTGGGTGGGAAAGAGCAGAATGATTATATTGTTGTTAGGAATCATATATTGGCTCTTTGGAGGGGGAATGTTAGGCGCTGGTTGACAAAGGGGCGGGTTAAGGAAACTGTTAGCAGTGAGTTTGCTCATTTAATTAATTCCGCGTACGATTTTCTTTTGTACAATGGGTATATAAATTTTGGGGTTTTGCCATCCTTTACGTCTCAGTTGCCTGAGGCGACAAATGGATCGGTTGTTGTTATTGGTGCTGGGTTGGCTGGGTTAGCTGCGGCGAGGCAGCTAATGTCTTATGGTTATAAAGTTGCCGTGTTAGAAGGTAGGAACCGTCCAGGCGGTAGAGTTTATACGCAAAAGATAGGAAAAGAGGGTAATTTTGCTGCCATGGATTTAGGTGGTAGTGTTATTACAGGAGTTAATGCTAACCCTTTGGCGGTTCTCGCACGCCAACTTTCTATTCCTCTGCATAAAGTCAGAGCGAATTGTCCTTTATTCAAGCCAAATGGGGAACCAGTTGATCGGGAAATAGATTCAAGTGTTGAATTTGTTTTCAATAAGTTGCTTGACAAAGTTATGGAGCTGAGGAAAATTATGGGTGGATTTGCAAGTGATACCTCACTTGGTTCAGTCTTGGAGACACTCAAGAGTTTATACGGTGTGGCTCAAAGTACTGATGAGAAGCAATTGCTCGATTGGCATTTTGCGAATTTAGAATATGCAAATGCTGGATGTCTTTCAAATCTTTCAGCTGCCCACTGGGATCAGGATGATCCTTTTGAAATGGCTGGTGATCATTGTTTTCCTGCTGGAGGAAATGGAAGATTAATTAAAGCTATATGCGAAGGAGTTCCTATTTTTTACGGAAAAACAGTCAACACTATCAGACATGGTAATGAGGGTGTTGAAATTATTGCTGGGGATCAAGTCTTTCAAGCGGATTTCGCCTTGTGCACGGTGCCTCTTGGAGTTTTGAAAAAGAAGGCCATTAGTTTTCAACCTGAATTACCTGCAAGTAAGCTGGAATCAATTGAGAGGATGGGTTTTGGGCTTCTGAACAAAGTTGCTATGGTTTTTCCACATGTGTTTTGGGGGGAAGATCTGGACACATTTGGATGTCTCAACGAAAGGAGTCATGATCGTGgggaattctttttattttacggTTACCACACTGTTTCTGGGGGCGCAGCACTAATTGCGCTTGTGGCTGGGGAAGCTGCGCAAACCTTTGAAACCACGGATCCATGCATCTTACTTCATCGAGTTCTGACCATTCTAAAAGGTATTTTTCAACCTAAAGGCATCACTGTGCCTGATCCAATACAGTCAATCTGTACCAGATGGGGAAGCGATCCCCTTTCTTACGGTTCATATTCTCATGTTAGTGTGCAATCATCTGGTCAGGACTATGATATACTTGCAGAAAATGTAGGAAACCGACTGTTCTTTGCGGGTGAGGCCACTTGTAGGCAATATCCAGCCACTATGCATGGGGCTTTCATGAGTGGCTTGAGAGAAGCTTCGCGCATATATAAATTAACCCATGTTCAGCAAGCTTATCCTAAGAAGTCCCTGGCGAAGAATATAGGACAAAGCACCGGCATCTTGCTAAATTTATTCCAGAATCCCGATCTGGAATTTGggaatttttcttttgtatttgaTCTTTCAACTGAAGATATGCAGAGTAAGGCGATTCTGCAGATGACTTTTCATGGTACTGAAGAACATCATAAGGAGatattatactttttttcaGATACCATAAAGTTACCGTTGCAACTTTACACCATCATATCCCGCGAACAGGTGTATCAAATGCAGGAAATGACAGGTGACGAAAATCGGTTGTCATATTTGACTAAAAACCTCGGGTTGAAGCTGATGGGTATAAATGCTTTACTCATTGCTGGTAAAGCTGTAATAGCTAGCATTGCTGGCTTCCGAAAAAGCAGGAGGTACCGCACACTTATCGCGCAACCCCGTAGCCAATAA 2250 0.4062 METPSSDGSVSRYSLRKKVNSRNYNNVLMDDDDLFDDKLDTSLKKKNKSQEDLQKETNTESMIAFSLGFPINVLLESEIRAGVVRELGGKEQNDYIVVRNHILALWRGNVRRWLTKGRVKETVSSEFAHLINSAYDFLLYNGYINFGVLPSFTSQLPEATNGSVVVIGAGLAGLAAARQLMSYGYKVAVLEGRNRPGGRVYTQKIGKEGNFAAMDLGGSVITGVNANPLAVLARQLSIPLHKVRANCPLFKPNGEPVDREIDSSVEFVFNKLLDKVMELRKIMGGFASDTSLGSVLETLKSLYGVAQSTDEKQLLDWHFANLEYANAGCLSNLSAAHWDQDDPFEMAGDHCFPAGGNGRLIKAICEGVPIFYGKTVNTIRHGNEGVEIIAGDQVFQADFALCTVPLGVLKKKAISFQPELPASKLESIERMGFGLLNKVAMVFPHVFWGEDLDTFGCLNERSHDRGEFFLFYGYHTVSGGAALIALVAGEAAQTFETTDPCILLHRVLTILKGIFQPKGITVPDPIQSICTRWGSDPLSYGSYSHVSVQSSGQDYDILAENVGNRLFFAGEATCRQYPATMHGAFMSGLREASRIYKLTHVQQAYPKKSLAKNIGQSTGILLNLFQNPDLEFGNFSFVFDLSTEDMQSKAILQMTFHGTEEHHKEILYFFSDTIKLPLQLYTIISREQVYQMQEMTGDENRLSYLTKNLGLKLMGINALLIAGKAVIASIAGFRKSRRYRTLIAQPRSQ 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02050 749 Gene3D - 246 551 - -
Tsu08g02050 749 SUPERFAMILY FAD/NAD(P)-binding domain 160 597 IPR036188 -
Tsu08g02050 749 Gene3D - 164 594 IPR036188 -
Tsu08g02050 749 ProSiteProfiles SWIRM domain profile. 54 155 IPR007526 GO:0005515
Tsu08g02050 749 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 39 737 - -
Tsu08g02050 749 SUPERFAMILY FAD-linked reductases, C-terminal domain 432 544 - -
Tsu08g02050 749 Pfam Flavin containing amine oxidoreductase 171 595 IPR002937 GO:0016491
Tsu08g02050 749 PANTHER FLAVIN MONOAMINE OXIDASE 39 737 - -
Tsu08g02050 749 Pfam SWIRM domain 79 146 IPR007526 GO:0005515
Tsu08g02050 749 SUPERFAMILY Homeodomain-like 56 157 IPR009057 -
Tsu08g02050 749 Gene3D - 59 158 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02050 Tsu-Chr8 27163354 27166008 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Tsu08g02050 Amino_oxidase 4.5e-88 CL0063