Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02043 ATGAACGAGAAAGCCAACGTTTCAAAGGAGCTCAACGCTAAACACAAAAAGATATTGGAAGGACTTCTTAAATTACCAGAGAATAGAGAATGTGCTGACTGTAAAGCCAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGAATTGTTCAGGAATACATCGAAGTCTTGGTGTACATATTTCAAAGGTTCGTTCTGCTACTTTGGACACCTGGCTCCCAGAGCAGGTTGCTTTTATTCAATCTATGGGAAATGAGAGAGCAAATAGTTACTGGGAAGCAGAGTTACCCCCAAATTATGATAGAGTTGGTATTGAACACTTCATTCGTGCCAAGTATGAAGACAAGAGATGGGCTGCAAGGGATGCTAAACCACAATCACCTTCTAGACTGCTAGAAGAGAAAAGTTCTTCACAATGGCAAAAGCCTGTGGAAAATACTTTtgaggaaaagaagaaaatccAACCATCAAATGCAATTCCTGCTACTAGAATTAGTGTTCTTGCTCCTCCTAAAGGACATGTGCAgGTAACTCCAGTGGCTAAACATCAGCATATTGAGAAAGTGGAACCTCTGGTGCCACAAGTACAAGCTGAAACATCACAGACGACTGGCACATCGCATAATCCCCCTCCAAAAGTTGACTTTGCTACAGACCTATTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCTGACGCAATTGATGCGTCTGCTGACGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACGTCAACAGCCGAGAAAACTGACACCAGGAAATCAGTTGAGAATACACCCCAGCCCACCTCTGGAATTGAGGATCTATTTAATAACTCGTCTTCAGTGACACCAAGTTCTGCTCTTGAAAAACCACAAAAAGATGTAAAAAATGATATTATGAGCCTCTTTGAAAAGAACAATATAGCATCTCCATTTGCTATGCACCAACAGCAGTTGGCTATGCTGGCACAGCAACAGTCTCTTCTAATGGCCGCTGCTGCAGCTAAATCTTCTAGTGGAGATGCCAAATATCCTGCTAATGTACAGCAACCTGGTCTCAATATTCCTATCCAAAGTTGGCCAGCTGCGAGCTACCCAATTCCAGGAGTAATGCCCGTGGGTAGTCAGGGAGACCTGCAGAAACTTATGCAGACAATGAACACGACTTCCGTGCATCCAGCAGAGACTTCAGTTCAGTATCCACCATCTAGTTATTTTACAATGTCACAAGTTGCTCCAGTTAACGGCACAACGACAACAGCAGCAAATAAACCTCAGTCAGCTACTCCAGTATCATCGAACACTACAAAGACAGCGAATGATTATGATTTTTCCTCATTAACACAAGGAATGTTTGCGAAACCCTGA 1398 0.4227 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMNCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIEHFIRAKYEDKRWAARDAKPQSPSRLLEEKSSSQWQKPVENTFEEKKKIQPSNAIPATRISVLAPPKGHVQVTPVAKHQHIEKVEPLVPQVQAETSQTTGTSHNPPPKVDFATDLFDMLSMDDPNEKGSDAIDASADDDNNWAGFQSAAETSTAEKTDTRKSVENTPQPTSGIEDLFNNSSSVTPSSALEKPQKDVKNDIMSLFEKNNIASPFAMHQQQLAMLAQQQSLLMAAAAAKSSSGDAKYPANVQQPGLNIPIQSWPAASYPIPGVMPVGSQGDLQKLMQTMNTTSVHPAETSVQYPPSSYFTMSQVAPVNGTTTTAANKPQSATPVSSNTTKTANDYDFSSLTQGMFAKP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02043 465 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 464 IPR044520 GO:0005096
Tsu08g02043 465 CDD ArfGap 19 117 - -
Tsu08g02043 465 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Tsu08g02043 465 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Tsu08g02043 465 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Tsu08g02043 465 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Tsu08g02043 465 PANTHER ARF GTPASE ACTIVATOR 1 464 - -
Tsu08g02043 465 MobiDBLite consensus disorder prediction 123 142 - -
Tsu08g02043 465 MobiDBLite consensus disorder prediction 199 215 - -
Tsu08g02043 465 SMART arf_gap_3 16 129 IPR001164 GO:0005096
Tsu08g02043 465 MobiDBLite consensus disorder prediction 427 452 - -
Tsu08g02043 465 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Tsu08g02043 465 MobiDBLite consensus disorder prediction 272 300 - -
Tsu08g02043 465 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Tsu08g02043 465 MobiDBLite consensus disorder prediction 190 303 - -
Tsu08g02043 465 MobiDBLite consensus disorder prediction 229 243 - -
Tsu08g02043 465 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02043 Tsu-Chr8 26923581 26932385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02043 16 118 C2H2 Transcription Factor Family AT4G05330 52.252 3.29e-30 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02043 08 26923581 26932385 Tsu08g02043 08 26923581 26932385 ECH