Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01990 ATGGCCATTCTACCATTaatgttttttgttgtcaagttactcttatttttctatCCAGTTTCCTCTAACATAAATATCATAACAAGGTTCCATTCTCTTCATGATGGAAACACATTGGTCAATGGAACATTTGAGTTGGGTTTCTTTAGTCCAGGTAGTTCCAAAAACCGCTATGTAGGAATATGGTTCAAAAATATCCCTACAAAAACGAttgtttgggtggcaaatcGTGACTGTCCAATTACTGACAAATCGGGAATGTTGAGTATAAACCAAGAAGGAAACCTTGTCCTTCTTGGCAAAAATGGCACAACTCATTGGTCAACCAATATAACACCCAAACCATCAAACTCAATCTTCATAGCACGGCTCTTAGATACCGGAAACTTGGTTTTAAATGACGAAAAAGACAAGCGCATCCATGGTGTTTACTTGTGGCAGAGTTTTGACTATCCCACCGATACAATTCTTCTTGGAATGAAGCTTGGTTGGAATCTAACAAGCAGCCTGAATCGGCGTATAATAGCTTGGAATAGTTGGAACGACCCTTCTTCGAGTACATTTTCTTATTTCCTCACAAGAAGTGACATTCCTGAAATGGAATTATGGAATGGTTCATCAATGTTATACAGAAGTGGGCCTTATAATGGCATTCGATTTAGCGCTACACCAATAAAGAAACATATTCCATTGTGCAGTTTCGATTTTGTTTACAAAACAGATGAGTATTATTCCGATTACAAACCTAAGGATCATCCATTTCTTTCGAGAATTGTCATTAACCAAACCGCAAATGCTCTTCAGTGCTACACGTTTTCTGAAGGGGATCAAAGATGGAAGTTGAATTTACATGTTCCCAGAGACGAATGTGATTACTACAACCGCTGTAGTTCGTTTGGGATATGTTCCATGATTGGTATGTCCTCAATGTGTAAGTGCTTAACTGGATTCATTCCAAAATCGCCTCTTAGTTGGAGTTTAAAGGATTGGTGTCAAGGATGTGTACGGAGTGATAATTGGAGTtgtagagaaaaaaataaagatggtttcatcaaatttcaaaatGTGAAGCTCCCAGACACTAAGCAATCTTGGATAAACAGAAGCATGACACTCGAGAAATGTAAAGAAAAATGTTGGGAGAATTGTTCTTGTACCGCTTATGCCAACTCAAACATCATTGGAGATGGAAGTGGTTGCATCCTTTGGTTCGGTGATCTCCTCGACTTGAGACAATTACCAGATTCTGGGCAAGATCTATATGTTAGATCGGTTGCTTCAGAAAATgCAAACCAAGATGGTTCAAGGAAAATGATAGTTGTGCTCACGAGTACCACTTCATTAATTATTGCAATGCTTTTTGTATTGATCATCATGTTTATTTGTTGGAGGAGAAAATCCAAATCTGAATTTAGAGagGAAACAAGAATCACGAAGACAATAGTAAAGAAAAGTGAAAGTAAACAAGAAGATTTGGAGCTACCTTTGTTTGATTTTGCTGCAATAGCATTCTCCACCGATGACTTCTCAAATGACAACAAGCTTGGCGAAGGTGGTTTTGGTCCTGTGTATAAGGGCTCATTACCAGATGGACAAGATATTGCAGTTAAAAGACTTTCTCATAGCTCTACTCAAGGAATAAAAGAATTTAAGAATGAGGTTACATTTTGTTCCAAACTCCAACATCGGAACCTTGTTAAGGTCCTTGGCTTTTGCATTAAAGACTTGGAGAAGTTACTCATCTATGAATATATGCCCAATAAAAGCTtagatttctttctttttgACTCCTCTCAAAGTAAATTTTTAGATTGGCATAGGCGATTCGACATTATTAGCGGTATTGCTAGAGGACTTCTTTACCTTCACCAAGACTCTAGATTAAGGGTCATACATAGAGATTTGAAAGCAagtaatattttattagatAACGATATGAGTGCAAAAATATCTGATTTTGGTCTAGCTCGAATTTGTGGAGGTGATCAAATTCAAGGAAACACTAGTAGAGTTGTTGGCACATaTGGCTATATGGCACCCGAATATGCAATTGACGGCATATTCTCTATCAAATCCGATGTATATAGCTTTGGAGTTTTATTGTTAGAGATTATAAgtggaaagaaaaataaaggactTTCCTATTCAAATCACAACCACAATATTATTGGGAATGCATGGGAATTGTGGAAAGATCGCATCCCAATGGAATTTGTGGATACTAGTTTGAAAGAGGACTCATATATTTCATCTGAAGTATTGAGATGCATTCATATCGGTCTTTTATGTGTGCAACATTATCCAAATGATAGACCAACTATGACATGTGTGCTTGTAATGCTAACTAGTGATAGCACTTTACCCCAACCAAAAGAGCCTATCTTCTTAACTGAAAAGGTTTTGGTTAGGAAAGAATCTACATCTGAACAAAAGATTTACTATTCTACAAATGAAGTGTCGATGTCAATATTGGAACCTAGATAG 2484 0.3527 MAILPLMFFVVKLLLFFYPVSSNINIITRFHSLHDGNTLVNGTFELGFFSPGSSKNRYVGIWFKNIPTKTIVWVANRDCPITDKSGMLSINQEGNLVLLGKNGTTHWSTNITPKPSNSIFIARLLDTGNLVLNDEKDKRIHGVYLWQSFDYPTDTILLGMKLGWNLTSSLNRRIIAWNSWNDPSSSTFSYFLTRSDIPEMELWNGSSMLYRSGPYNGIRFSATPIKKHIPLCSFDFVYKTDEYYSDYKPKDHPFLSRIVINQTANALQCYTFSEGDQRWKLNLHVPRDECDYYNRCSSFGICSMIGMSSMCKCLTGFIPKSPLSWSLKDWCQGCVRSDNWSCREKNKDGFIKFQNVKLPDTKQSWINRSMTLEKCKEKCWENCSCTAYANSNIIGDGSGCILWFGDLLDLRQLPDSGQDLYVRSVASENANQDGSRKMIVVLTSTTSLIIAMLFVLIIMFICWRRKSKSEFREETRITKTIVKKSESKQEDLELPLFDFAAIAFSTDDFSNDNKLGEGGFGPVYKGSLPDGQDIAVKRLSHSSTQGIKEFKNEVTFCSKLQHRNLVKVLGFCIKDLEKLLIYEYMPNKSLDFFLFDSSQSKFLDWHRRFDIISGIARGLLYLHQDSRLRVIHRDLKASNILLDNDMSAKISDFGLARICGGDQIQGNTSRVVGTYGYMAPEYAIDGIFSIKSDVYSFGVLLLEIISGKKNKGLSYSNHNHNIIGNAWELWKDRIPMEFVDTSLKEDSYISSEVLRCIHIGLLCVQHYPNDRPTMTCVLVMLTSDSTLPQPKEPIFLTEKVLVRKESTSEQKIYYSTNEVSMSILEPR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01990 827 Pfam PAN-like domain 342 410 IPR003609 -
Tsu08g01990 827 Pfam D-mannose binding lectin 70 177 IPR001480 -
Tsu08g01990 827 SMART serkin_6 509 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01990 827 CDD STKc_IRAK 515 782 - -
Tsu08g01990 827 ProSiteProfiles Protein kinase domain profile. 509 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01990 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Tsu08g01990 827 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Tsu08g01990 827 Pfam S-locus glycoprotein domain 210 321 IPR000858 GO:0048544
Tsu08g01990 827 CDD PAN_AP_plant 341 423 - -
Tsu08g01990 827 Gene3D - 20 149 IPR036426 -
Tsu08g01990 827 Pfam Protein tyrosine and serine/threonine kinase 512 777 IPR001245 GO:0004672|GO:0006468
Tsu08g01990 827 SMART ntp_6 345 424 IPR003609 -
Tsu08g01990 827 Gene3D Phosphorylase Kinase; domain 1 467 584 - -
Tsu08g01990 827 SMART blect_4 30 152 IPR001480 -
Tsu08g01990 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Tsu08g01990 827 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 809 - -
Tsu08g01990 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 183 IPR036426 -
Tsu08g01990 827 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Tsu08g01990 827 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 14 809 - -
Tsu08g01990 827 Gene3D Transferase(Phosphotransferase) domain 1 585 792 - -
Tsu08g01990 827 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Tsu08g01990 827 SUPERFAMILY Protein kinase-like (PK-like) 495 800 IPR011009 -
Tsu08g01990 827 CDD B_lectin 32 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01990 Tsu-Chr8 26003834 26017567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01990 440 810 Receptor kinase-like Gene Family AT4G23190 52.910 1.89e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01990 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01990 08 26003834 26017567 Tsu08g01990 08 26003834 26017567 ECH