Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01757 ATGCAAGCGATCATGGATCCAACCAAAAAGCGCAAGCTTGACGAGAACGGGTTCGGTGGAGAAGCTGATCACCTAAAGCTCTCCCCGTCGGAAGCCCGCAAGGTCATCGAGCGGTTCACCCCTGACCAGCTAATCAACATCCTCCAAGACGCTGTCGTCCGCCATCCAGACGTTCTCTCCGCCGCTCGTGCAATTGCAGACACTGACATATCCCAACGCAAGCTCTTCATCCGCGGCCTTGGCTGGGACACCACTACTGAAGGTCTCCGCTCACTCTTTTCAACCTACGGTGAACTCGAAGAAGCCATCGTGATCCTCGACAAGGTCACCGGGAAGTCAAAAGGTTACGGCTTTGTCACCTTCCGTCACGTGGACGGAGCCCTACTCGCACTCCGCGAGCCTAGCAAGCGCATCGACGGACGCGTAACTGTCACGCAGCTAGCCGCAGCAGGGAATTCAGGCTCCAACACCAACGCAGCTGACATTGCGCTCCGCAAAATATATGTGTCCAACGTGCCGCCGGATCTCGCAGGGGATAAGCTTTTGGCCCATTTCTCAATTTATGGGGAGATTGAGGAGGGCCCATTGGGCTTTGATAAACAAACAGGAAGGTCGAAAGGGTTCGCTCTTTTCGTCTATAAGACACCGGAAGGGGCACAGGCTGCGCTGCTGGAGCCCGTCAAGAATGTAGAGGGGCGGCAGTTAAATTGCAAACTGGCAATAACAGATGGGGGGAAACAGCAAGGGATGCGTGGTGGGTCGGATGGGGTTCAAGGTCGTGGGAATGCTCAGGGAAATGGCATGGGGATGGCGTCTGCACCTGGGCCTGGGGCAGCTCAATACAGTGGTTCTGTTGGTATTGGTTCTTATGGAGGGTTTTCTGGTGGACACCAGGGTCAGCCTCCAATGGGTAACCATCCTCTGAATTCGTCTGTTGGTGGTGGTTTATCTTCTGTGGGGAATCAGGCCCCGTCTTCAATGGGTGGTACCGGTGGATATGGTGGTGGTCATTATGGGGGCTATGGTGGGCCTGCTGCAACAGGTTTTGGCGGTAGTGGTGGCGGCGGTGGTTATGGAGGAGGTAGTGGTGTGACTGGTGCGGGTGCGGGTACTGGTGGTGGACTTGGCTCTGCTGGAGGTACTGTTGGACTTGCTTCCCTGTATAGATTACCAAGTTCAGGTGGAATGCAAGCTGGTGGGTATCCTGACAGTGGACACTATAGTTCATCAGGTTATCACAATCAGCATCATCCTCCTGCTGTAGCGTCGCCGGTACCAAGAGTTCAACCTGGTTCCATGTATCCAAATGTGCCTCCTTACTACTAA 1326 0.5468 MQAIMDPTKKRKLDENGFGGEADHLKLSPSEARKVIERFTPDQLINILQDAVVRHPDVLSAARAIADTDISQRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVSNVPPDLAGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGGKQQGMRGGSDGVQGRGNAQGNGMGMASAPGPGAAQYSGSVGIGSYGGFSGGHQGQPPMGNHPLNSSVGGGLSSVGNQAPSSMGGTGGYGGGHYGGYGGPAATGFGGSGGGGGYGGGSGVTGAGAGTGGGLGSAGGTVGLASLYRLPSSGGMQAGGYPDSGHYSSSGYHNQHHPPAVASPVPRVQPGSMYPNVPPYY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01757 441 MobiDBLite consensus disorder prediction 245 276 - -
Tsu08g01757 441 CDD RRM_RBM24_RBM38_like 73 148 - -
Tsu08g01757 441 SMART rrm1_1 166 238 IPR000504 GO:0003723
Tsu08g01757 441 SMART rrm1_1 74 146 IPR000504 GO:0003723
Tsu08g01757 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Tsu08g01757 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
Tsu08g01757 441 PANTHER GEO13361P1-RELATED 5 411 - -
Tsu08g01757 441 MobiDBLite consensus disorder prediction 399 441 - -
Tsu08g01757 441 PANTHER UBP1-ASSOCIATED PROTEIN 2C 5 411 - -
Tsu08g01757 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Tsu08g01757 441 SUPERFAMILY RNA-binding domain, RBD 65 150 IPR035979 GO:0003676
Tsu08g01757 441 Gene3D - 55 159 IPR012677 -
Tsu08g01757 441 MobiDBLite consensus disorder prediction 292 328 - -
Tsu08g01757 441 Gene3D - 160 273 IPR012677 -
Tsu08g01757 441 MobiDBLite consensus disorder prediction 303 328 - -
Tsu08g01757 441 SUPERFAMILY RNA-binding domain, RBD 158 267 IPR035979 GO:0003676
Tsu08g01757 441 CDD RRM_RBM24_RBM38_like 165 240 - -
Tsu08g01757 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01757 Tsu-Chr8 21386966 21390919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01757 161 250 C2H2 Transcription Factor Family AT2G19380 40.860 7.67e-12 65.5