Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00700 ATGGATGATTCCGGTGATCGGTTTCCCATCGGAATGCGTGTTCTTGCCGTCGATGATGATCCTACTTGTCTTTTGGTTTTGGAAACTTTGCTCCGAAGATGTCAATACCATGTAACCACAACTAGTCAAGCAAGAACAGCATTGACTATGTTGAGAGAAAACAAAGACAAGTTTGACTTGGTTATCAGTGACGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTGGAGATGGACCTTCCTGTCATAATGTTGTCTGCATATGGTGATACGAAGCTGGTGATGAAGGGAATTTCCCACGGTGCCTGTGACTATCTGCTGAAACCCGTGAGGTTAGAGGAGCTGAAGAACATATGGCAGCATGTAATTAGGAAGAAGAAGTctgatccaaaggagaaaaacaaagCAAGCAAACCAGACAAAACTACTTCTGATAGTGGCAGTGGACTGAGATCAGCAGGAACAGAAAATACAGATGAAAATGGAAAGCTGACTAAGAAAAGGAAGGATCAGGATGAAGACGAAGATGAGGATAAAGAGAATGGTAACGAAAATGAGGACCCATCTGCCCAGAAGAAGCCCCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTGGGCATTGACAAGGctgtacccaaaaaaattctTGATATGATGAATGTCGAAAACATTACAAGGGAGAACGTGGCGAGTCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTGGCAAACCAGCAAGCTAGTATGGTCGCAGCCTTGGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAATGGGATAATTGGTAATCTGAACACTCCAACTGGTCTGAATGGGCATGGATTTTCTCCTTCCGGACTACTTCAGTTGGGCCAATCACAAAGCTTTAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAACTATAACCCCAGTTAATCAGAATATTCTTCAAGGAATGCCAATGTCCATAGGGTTTGATCACTTACAAAACAACAGCAAGGGTGTTTTTCCTGTTCAAAACCTGAATACTGATGTGAAACCAACTTTTCCCATCCCAAATAAATTCCCGGATCAAAGACCAAAAGTAGCCATCTCTAGTTCTCATCCCCCAAGTCTTGGTATCTCGAACAACGGCTTGATGTTGGAAACACACCCTGAAGGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCGTCTTCTTCCGTAGCCTCTCAACATTCGGAATTTTCTTTCTCTATGTTGGATCAAGGTAGGCATAGTGATAATTGGTCAAGCGTCGTGCCGTTATCTGGAATCCAGACAAATTCTTTCCCTTCAAGTGAATGTTTTAGACAGACAGCTATTCCTCCCTCAGATAACATGGCTTCTTTGCCCTTGCAATCCGGGTATCCCGGTGGGTCATTGGCAGATAACATGGCTTCTTTGCCCTTGCAGGCGGGGTATCCCGGTGGGTCATTGGCAGATGTGCACTCTCAAGTGGGGTATCCCGGTAATTTGCCATTTCAAGGATGGGAGGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGTGGGTCAATTAACTCCCTTGCTCCAGTTAACGGTGCTGTTGTTCCACCAGGCCGAACAACCACTAACTCACCCTTGCACACTAAATTTTGTGATCCCATGCAAATGAAGCAAGCTGGATTCGCTGAGTTCACTGAATGCAGCTCATCAAGACAGCCTCGAGCGAATATTGTAAGCCAGCAGAGGTTTTCTAATAATCTCGGTTCACTGGAGTATTTGGCGAGTTCAATGATGGAACAGGAGCAAGATAAGATGAAATTATTGGGTGGAGACTTCATATGCGATAGCTACTCTGGCGGGGTATCTTTGTGA 1971 0.4333 MDDSGDRFPIGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQARTALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKASKPDKTTSDSGSGLRSAGTENTDENGKLTKKRKDQDEDEDEDKENGNENEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPNGIIGNLNTPTGLNGHGFSPSGLLQLGQSQSFNNSSNDQLKFQSTITPVNQNILQGMPMSIGFDHLQNNSKGVFPVQNLNTDVKPTFPIPNKFPDQRPKVAISSSHPPSLGISNNGLMLETHPEGKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHSDNWSSVVPLSGIQTNSFPSSECFRQTAIPPSDNMASLPLQSGYPGGSLADNMASLPLQAGYPGGSLADVHSQVGYPGNLPFQGWEDRNQDATYHSNVTCGSINSLAPVNGAVVPPGRTTTNSPLHTKFCDPMQMKQAGFAEFTECSSSRQPRANIVSQQRFSNNLGSLEYLASSMMEQEQDKMKLLGGDFICDSYSGGVSL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00700 656 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Tsu07g00700 656 MobiDBLite consensus disorder prediction 165 179 - -
Tsu07g00700 656 MobiDBLite consensus disorder prediction 130 145 - -
Tsu07g00700 656 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 636 - -
Tsu07g00700 656 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Tsu07g00700 656 MobiDBLite consensus disorder prediction 146 164 - -
Tsu07g00700 656 Gene3D - 11 148 - -
Tsu07g00700 656 SMART REC_2 12 124 IPR001789 GO:0000160
Tsu07g00700 656 MobiDBLite consensus disorder prediction 130 200 - -
Tsu07g00700 656 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Tsu07g00700 656 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Tsu07g00700 656 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 636 IPR045279 GO:0009736
Tsu07g00700 656 PIRSF RR_ARR_type-B 1 653 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tsu07g00700 656 Gene3D - 194 257 - -
Tsu07g00700 656 SUPERFAMILY CheY-like 11 133 IPR011006 -
Tsu07g00700 656 CDD REC_typeB_ARR-like 14 128 - -
Tsu07g00700 656 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Tsu07g00700 656 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00700 Tsu-Chr7 5669782 5674160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00700 6 421 Response Regulator Gene Family AT2G25180 53.759 4.72e-131 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu07g00700 Response_reg 2.7e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01139 01 10497690 10504717 Tsu07g00700 07 5669782 5674160 PCT