Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01351 ATGTGTAGATCAAGTTGGGGTCTTGGTGGAAATGGATGGGTGTGGGCCAGACATCCGAACGCAATTTATTCTGTTGGAGGGGCATATCATTTGTTGAGTCATTTGGTTCCGAGAGACTTGTCAACTGATAGCGAGTTAGTTTGGAACAAGTTTGTTCCGTTGAAAATTAATACTTTTGCTTGGAGACTTCTTAGCAACAGACTACCTGCTAAGTCCAACTTAATTGTTCGTGGTTGTTTGCATAATGAATCGGCCATGTGCACTGCTGATTGTGGAGTTCTAGAGGATTTTAATCATCTTTTTCTGAATTGTGCTTTTTTTGGTTCGATTTGGGGTGATATTATTAGATTTCAatcttctctctcatttttctctctccAGAAGGGCAAAAAACCTAAAGACCGTTTGCACCCACCAATTGTCATGGATGATGATGTGCTGAATATGCCGAATTGGGGTTACTATGAACCCTTCAAAGCGGGGAATCTAGGTCTGAACCTCATGCCGAGTATCAATGATCGTGAAACGAAACCATTTTTTCCTCCTGGTCGCGATCCAGCTATGTTAGTTGGTGCAAATGGAACTTTTCACCCTCGAGATAATGTTGCTGCTGTTGAGTCTTCGAATCCATTGAACTATGGAAGAGATAATTGGATCAACCAGAGACCTAGGTTTTATAATATGCAGGTCAACAATCCAAATTATGCTGTTCCTCCTGAAACATCGCAAGGACCCTCCTTTCCGTTTATTCCATCTGCTGTTACTGATCCACCAAGAAATGAGAATGTGgatgaaattgaagaattaGCTGTTAAGAAGGAAGGTGGCAAGGTGAAGAAAAGGAAATCTAAGGGTGCTGCTATTACCACTCCAAAAGCTAAGAAACCCAGGAAGCAGAAGGATAATAGCAATGTTTCAGGTCAAGGTGTGAAACCACCGAAGAAGACTGTGGCACTTGAAATCAATGGAATTGAAATGGACATTTCTGGTCTACCTGTTCCAGTTTGTTCCTGCACTGGGAATCCTCAACAGTGTTATCGATGGGGCTGTGGAGGTTGGCAATCTGCTTGTTGTACAACAAATGTGTCAATTTATCCTTTGCCGATGAGCCTCAAAAGGCGTGGTGCAAGGATAGCTGGGAGGAAAATGAGCCAAGGGGCATTCAAAAAGGTTTTGGAAAAGCTTGCGGCTCAAGGTTACAATTTTGCTAACCCTATTGATCTGAAGACTCACTGGGCTAGACATGGCACCAACAAGTTTGTCACTATCAGATAG 1275 0.4133 MCRSSWGLGGNGWVWARHPNAIYSVGGAYHLLSHLVPRDLSTDSELVWNKFVPLKINTFAWRLLSNRLPAKSNLIVRGCLHNESAMCTADCGVLEDFNHLFLNCAFFGSIWGDIIRFQSSLSFFSLQKGKKPKDRLHPPIVMDDDVLNMPNWGYYEPFKAGNLGLNLMPSINDRETKPFFPPGRDPAMLVGANGTFHPRDNVAAVESSNPLNYGRDNWINQRPRFYNMQVNNPNYAVPPETSQGPSFPFIPSAVTDPPRNENVDEIEELAVKKEGGKVKKRKSKGAAITTPKAKKPRKQKDNSNVSGQGVKPPKKTVALEINGIEMDISGLPVPVCSCTGNPQQCYRWGCGGWQSACCTTNVSIYPLPMSLKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFANPIDLKTHWARHGTNKFVTIR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01351 424 MobiDBLite consensus disorder prediction 275 313 - -
Tsu02g01351 424 Pfam GAGA binding protein-like family 142 424 IPR010409 -
Tsu02g01351 424 SMART GAGA_bind_2 142 424 IPR010409 -
Tsu02g01351 424 PANTHER BNAA06G09500D PROTEIN 109 424 - -
Tsu02g01351 424 MobiDBLite consensus disorder prediction 276 293 - -
Tsu02g01351 424 PANTHER - 109 424 IPR010409 -
Tsu02g01351 424 Pfam zinc-binding in reverse transcriptase 23 111 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01351 Tsu-Chr2 11726765 11731759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01351 142 424 BBR or BPC Transcription factor family AT2G01930 55.034 3.82e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Tsu02g01351 GAGA_bind 4.1e-95 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01351 02 11726765 11731759 Tsu02g01351 02 11726765 11731759 ECH