Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01328 ATGTCTTCTTCTCAAATGGGTTTTCTCTTCTTTTGCTCTATGCTTTTTCTTTTCACTTCAGCTTCATCTAGAAATTTGCCTATTATAGCCTTTGATGAAGGGTACACACCCTTGTTTGGTGATAACAACGTCTTTGTTCATAAAGATGGCAAATCGGTTCATCTTTCACTAGATGAAAGAACAGgTTCTGGATTTGTCTCTCATGATCTTTACCTTCATGGGTATTTCAGTGCTTCCATTAAGTTACCTTCTGACTATACTGCTGGAGTTGTGGTTGCTTTTTATATGTCAAATGGTGACATGTATGAGAAGAACCATGATGAAATAGACTTTGAGTTTTTAGGTAACATTAGAGGCAAAGACTGGAGAATTCAGACCAATGTTTATGGCAATGGAAGTACTAACATTGGCAGAGAGGAAAGATATGGTCTCTGGTTTGATCCTGCTGAGGATTTTCATCAGTATAGTATTCTCTGGACAGATTCTCATATCATATTTTATGTAGATAACATTCCTATTAGAGAAGTTACGCGAACAAAATCTATGGGAGGAGATTTCCCCTCTAAGCCTATGACTCTGTATGCGACAATATGGGATGCATCAGATTGGGCTACCAATGGCGGAAAGTACAGAGTAAATTACAAGTATGCACCATACGTTGCCAAATTCTCCGACCTTGTCCTCCACGGTTGTTCAGTCGATCCTATCGAGCACGTAGCCAACTGTGACACTACTCAAAGTTCCGAAGCCATTCCTTCTGGTGTTACACCAGTACAAAGAATCAAAATGGATAATTTCAGAAAGAAGCACATGACATACTCCTACTGTTACGACAAAATCAGATACACCAAAGCTCCTCCATCAGAGTGTGTGATCAATCCACAAGAAGCCGAAAGACTAAGAAGATTTGACCCTGTCACATTCGGTAGTGGCCGACATCGTCATGGAAAACGACACCATCACAGCAAAGGAAACCACGCTGAAGCTGTTTCATTTTAA 999 0.4004 MSSSQMGFLFFCSMLFLFTSASSRNLPIIAFDEGYTPLFGDNNVFVHKDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTNIGREERYGLWFDPAEDFHQYSILWTDSHIIFYVDNIPIREVTRTKSMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAKFSDLVLHGCSVDPIEHVANCDTTQSSEAIPSGVTPVQRIKMDNFRKKHMTYSYCYDKIRYTKAPPSECVINPQEAERLRRFDPVTFGSGRHRHGKRHHHSKGNHAEAVSF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01328 332 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu02g01328 332 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 253 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tsu02g01328 332 Gene3D - 18 290 - -
Tsu02g01328 332 Pfam Glycosyl hydrolases family 16 33 215 IPR000757 GO:0004553|GO:0005975
Tsu02g01328 332 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 223 IPR000757 GO:0004553|GO:0005975
Tsu02g01328 332 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu02g01328 332 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 311 IPR044791 GO:0004553
Tsu02g01328 332 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 7 311 - -
Tsu02g01328 332 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 294 IPR013320 -
Tsu02g01328 332 MobiDBLite consensus disorder prediction 308 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01328 Tsu-Chr2 11581905 11584748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01328 6 331 Glycoside Hydrolase AT1G14720 67.470 4.72e-169 471
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01328 02 11581905 11584748 Tsu02g01328 02 11581905 11584748 ECH