Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01326 ATGATTGCAAATAAAGATCTTCGTAATGGTGTTCCTGACTCTGATGGTGAAACCTCCAGGAACAAGTTATCAAGACCCAATTTTGAGCCTAACAAACGTTACCCAGATGACAAAGATGTTGTTTTTCTCAGAGATTCACAGATGGGTGGTGCTGCTTCTGCTGGCCATGGCCAAGAACTAACCCTCAGTTATCTCTGTGGAAACCCAAAATTGAATCTTGCTGATGGTGAAAGCTTTCTGATGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGATAATTCAAATCAAGATGGAAAATGGGTTGAAAGAGATTTTCTTAGTTtgagtgaaacaagagaagatTCTTCAAAGAGATCTGTTGAAGAAGATGTTGAAAGAGAATATATTAGAGATAAAAAACCAAAGCTTGAGACATTGAATCTCTCTCTTGCTTTACCtgatgtttctctttctcttactGCTTCAAATGCTGTACACAACAATGgtgatcaacatcaacatcaagTAGTTAGAGCAAAACCTAATAGGCCTTCAACTACACATACTTCATATTCAAATGATTATACAGCACCTTCTTTGTCTTATTCTTATTCACACCCTTTTTCACATAATCCAAGTTGTTCTTTAACTCGTAATTCGACCgataattttgattattctgTTAGTAAAGATGATCAAATTTGGAATTGTGGTGAAGGAACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGTGATGGTGTTGTTGCTTTGTCAAATCATGGTGGTGGAACTAGTCTTAGTTCATTCATGCAACAAGGTAATAATAACAGTCAGTATAAAACTACAAGTTCAGAAAATcattctttttttccttctgaATTGCCTGCTAGACCTAGATTTGAAGCTCATTCAGGGGATTCTAGGGGAAGGAATTCTGAGAATATGAGAGTGTTTGAAGGTTTAGATGGTGGTAATAAGATGAGGAATGTTTCAAGACCAGAGAGGATTGTTAGGGAGATTGTTTCGGAATCTATCCCTATTGTTTCGTTGACTATTCAGGAGCTTACCGATGAAGTTGTAGCATCAACTAAGGAATATTTGAAGAATCTGATTGAGAATAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGGCTTGAGAGAAGGTCTGATCTTACTAAGGAGACTCTTTCAAAGTGTAATAAAGTTCAAATAGAGATTTTAGTTGCTGTCAAGATGGGACTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGGTTTACTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGACTGTGACTGTAAGATTTGCTTGGGAAATAAAGGGTTTTGTAGTTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGATGCGATGTTTGTTCACACTGGTGTCATGCTGTTTGTGGCATCCAGAAGAAGCTCATCAAACCAGGACCAAGTTTGAAGGGTCCTTCTGGTACCTCGGAAATGCAGTTTCATTGTATTGGATGTGGACATGCCTCGGAGATGTTTGGATTTGTTAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGAGTTGAAACCTTGTTGAAAGAGCTTGACTGTGTGAGGAGGATTTTCATGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAAACCGATGACttgctattaaagcttcaaaCTAAAATGGTATCTCCTTCAGATGCCTGCAATTACATCATGCAATTTTTCAGCTATGCTGAAAACATGGCAAACTTTCCGGTTCCGGCTTCTGGTTTTTCTTCAAAGGAATTGATAGCCTCTCAAGCGAACCATCCAAAGGACATACTATCTCTTCCAAAATCTAGTTCTTCAATACCAAAATACGCTTACGACTCGAGCTATTCAAGGCCACATTCCAGTGCCCCGTCAAAAGATCTTCATCAAAAGGACTTCAAAGCTACCATCTTAAGTGAACTAAAAAATGATGCTGATCTTCAATTGGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCCGAAGCAAAAATGTTCCAAACCAAAGCGGATGAAGCAAGGAGAGAAGCTGAAGGGTTCCAAAAGATGGTCAGGACAAAGACTGCACAGATGGAAGAAGAGTATGCGACAAAGCTTTCAAAACTATGTCTAAATGAGACCGAGGAATCGCAGAGGAGGAAATTGGATGAGCTGAAAGTTGTGGAAAATTCATATATTGATtactttaaaatgaaaaagagaatgCAAGATGAGATTGATGGTTTGTTGCAGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA 2388 0.3673 MIANKDLRNGVPDSDGETSRNKLSRPNFEPNKRYPDDKDVVFLRDSQMGGAASAGHGQELTLSYLCGNPKLNLADGESFLMSQKGKEVMVSDNSNQDGKWVERDFLSLSETREDSSKRSVEEDVEREYIRDKKPKLETLNLSLALPDVSLSLTASNAVHNNGDQHQHQVVRAKPNRPSTTHTSYSNDYTAPSLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVVALSNHGGGTSLSSFMQQGNNNSQYKTTSSENHSFFPSELPARPRFEAHSGDSRGRNSENMRVFEGLDGGNKMRNVSRPERIVREIVSESIPIVSLTIQELTDEVVASTKEYLKNLIENKKEELVSLQNRLERRSDLTKETLSKCNKVQIEILVAVKMGLSSFLYGNLQLSEMVEVYLYRRCRNVTCKSLLPVDDCDCKICLGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGVETLLKELDCVRRIFMGSEDRKGKELHFKTDDLLLKLQTKMVSPSDACNYIMQFFSYAENMANFPVPASGFSSKELIASQANHPKDILSLPKSSSSIPKYAYDSSYSRPHSSAPSKDLHQKDFKATILSELKNDADLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARREAEGFQKMVRTKTAQMEEEYATKLSKLCLNETEESQRRKLDELKVVENSYIDYFKMKKRMQDEIDGLLQRMEATKQHWV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01326 795 MobiDBLite consensus disorder prediction 162 184 - -
Tsu02g01326 795 Coils Coil 773 793 - -
Tsu02g01326 795 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 2 795 IPR004082 -
Tsu02g01326 795 Coils Coil 697 717 - -
Tsu02g01326 795 MobiDBLite consensus disorder prediction 266 285 - -
Tsu02g01326 795 PANTHER PROTEIN OBERON 3 2 795 - -
Tsu02g01326 795 CDD PHD_OBE1_like 461 520 - -
Tsu02g01326 795 Pfam PHD - plant homeodomain finger protein 431 555 IPR032881 -
Tsu02g01326 795 Pfam Coiled-coil region of Oberon 660 784 IPR032535 -
Tsu02g01326 795 Coils Coil 359 386 - -
Tsu02g01326 795 MobiDBLite consensus disorder prediction 10 39 - -
Tsu02g01326 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Tsu02g01326 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 422 443 IPR004082 -
Tsu02g01326 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 468 488 IPR004082 -
Tsu02g01326 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 541 560 IPR004082 -
Tsu02g01326 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 691 711 IPR004082 -
Tsu02g01326 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Tsu02g01326 795 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01326 Tsu-Chr2 11560331 11564125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01326 431 528 PHD Gene Family AT5G57380 29.592 6.40e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01326 02 11560331 11564125 Tsu02g01326 02 11560331 11564125 ECH