Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01325 ATGATGATGACTCCAAACTTGAACTTGGAGCCTGAAAATCAGTCAGAAGCACCTTATGATCATCTAGATTCTATGACTCTTGATTTGACACTCAATTTCAGTTCCAGTGACAGCGAGTTAAAGGGTTCGAGTGATGCTAGCAGTGAAGTAGGAGCTGGTGAAGATCAAGCTGCCCCAAATGTAACTCCAAGGGTTTTCTCTTGTAATTACTGCAAGAGAAAATTCTTTAGCTCGCAAGCGTTAGGAGGTCATCAAAATGCTCACAAAAGGGAGAGAACGATGGCTAAACGCGCGATGAGAATGGGAATGTTCACCGAGCGGTATACAAGCCTAGCATCTCTGCCTCTTCATGGTTCACCTTTTCGGTCCCTCGGTGTTGAAGCTCATTCTGCAATGCATCAAAGAAGTCATATGcaaccatcatcatcaatgAGGTCTCCTGATATGAGAGCTGCTGCAAAATTTGATAGAAACCATTTCGGATCATTAGTTTTCGTGGAAGACGATGATGTAGGATTCTTTTGGCCCGGAAGTTTCAGACAGGTGGATCAAGGAGGTGGTATTAATATAGGACATCCTCAAACTTCAAATTCTAGTTTTGTTCCAATGGAACCACCTCCGCCGCAAGAATCTACATCTCCTGATCTCACATTAAAGTTATAA 663 0.4178 MMMTPNLNLEPENQSEAPYDHLDSMTLDLTLNFSSSDSELKGSSDASSEVGAGEDQAAPNVTPRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGVEAHSAMHQRSHMQPSSSMRSPDMRAAAKFDRNHFGSLVFVEDDDVGFFWPGSFRQVDQGGGINIGHPQTSNSSFVPMEPPPPQESTSPDLTLKL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01325 220 MobiDBLite consensus disorder prediction 184 220 - -
Tsu02g01325 220 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Tsu02g01325 220 PANTHER ZINC FINGER PROTEIN JAGGED 19 220 IPR045320 GO:0003700
Tsu02g01325 220 MobiDBLite consensus disorder prediction 36 59 - -
Tsu02g01325 220 PANTHER ZINC FINGER PROTEIN 3-RELATED 19 220 - -
Tsu02g01325 220 Gene3D Classic Zinc Finger 55 113 - -
Tsu02g01325 220 SUPERFAMILY beta-beta-alpha zinc fingers 63 94 IPR036236 -
Tsu02g01325 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01325 Tsu-Chr2 11552446 11554836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01325 59 220 C2H2 Transcription Factor Family AT1G66140 45.213 4.68e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g01325 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01325 02 11552446 11554836 Tsu02g01325 02 11552446 11554836 ECH