Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01324 atGGCTTTGTTTATACATGATAATCACTTTCACATAATCtccttgttcttgttcttgttcttgatTATTTTGCCAACATCAATTTCCCAACAACAACTTAACAAATATGAAGAGTGTCTCATACCATACACATGTGGTGGATTATCCGAATACTATCCATTTTGGGGAGAAAATCGACAAAATTATTGTGGCAGCAACGTTAACACCGATCAATTCCACCTCAAATGTGATTCTCAAAACACATCTATTCAAATTGCTTCACAAAATTTCCAAGTCTTACACATTGATCAACTCGGTTACAACATCACAATGTTCCGAAAAGGCCTTGTTTATGATAATTGTTCTTCTGCATTAACCAATACTTCTTTAGACTTGAGGCACTTTCAATATATGCCTAATGTGAAAAACATCACTATTTTATATAACTGTACTAATGATATTGAGTTTCTAAATGGCATGAAAGCGAACGTGAGCTCGTTTTCGTGCAAGGAAGATGAGAAAAAGCGCGCTTTCTATGCGGATTCTGCAATAGCAAAGGGCATAAAATGTGACGGAGTTCGAATTGAAGTTCAGGTAACACAGGAAGTGGAGCATGGTGATGGAATTGAAGAGTTGAACAAAGCTTTGAATAATGGATTTgatgttaaatatttttcaaattctcaagAATGCTTAAAATGTATTTTAAGTAATGGAACTTGTGGAGGGAATGATAAGTCTCAATTTTCCTGCTATTGTCCCGATGGAACTGAAGGTTTAGATTGTTCTCATCTCCACGATAATGGATGGAATTGGAAAAAGAAGTTTGGTGTAGTTGCTGTTGCTGCTGTGGCTAGTGCAATTTTTGTAGGCATTGCCTTCTATATATATTATGgcagaaagaagaaaaagaatattcGCGCGGTATCATCTACTGTACTATCTCGTAGTATTTCTAGTTCTAGTTCAGAAGATTCTGAGAATGGAAGTAGATATCATGGAGTCCACTTCTTCACCTATAGTGAACTTGAAAAAGCCACAAACAACTTTGATTCTATCAGAGCACTAGGAGATGGAGGCTTTGGCACTGTCTATTTTGGAAAACTGCGAGACGGGCGTTTGGTTGCGGTGAAACGAATGAACGAAAACAACTATAGGAGAGTTGAGCAATTTGTGAATGAAGTTGAGATATTAACCGGCTTACACCATCAAAATCTTGTGTCACTATACGGATGCACTTCGCGCCACAGTCGCGAACTTCTGCTTGTATATGAATATGTTCCTAATGGAACTGTTGCTGATCACCTTCATGGTAAAAAAGCAAAACCTGGCATGCTACCTTGGCATATCAGAATGAACATTGCAATAGAAACTGCTAGTGCATTGGTATATCTTCATGCCACTGACATCATCCATAGAGATGTGAAGACAACCAACATTCTCCTCGACAATCATTTTAGTGTCAAAGTAGGAGATTTTGGACTTTCGCGTCTATTTCCAATCCATGTCACACACATTTCAACTGCTCCACAAGGGACTCCTGGTTACGTGGATCCGGAATACCATTTGTACTATCAACTTACTGATAAAAGCGATGTATTTAGCTTCGGAGTTGTGTTGATTGAGCTGATATCATCTATGCCTGCTGTCGATATCTTAAGGAAAAGACAGGATATCAATTTGTCTAACATGGCTATTAAGAAGATTCAAAATGGAACATTGCATGAGCTTGTTGACCCTACACTTGGTTTTGAATCAGATTTCAAGATAAGGAAAATGATCAATGCTGTAGCAGAGTTAGCATTTCAGTGTTTGCAAAGTTCTAAAGATGTTAGACCTTCAATGGTTGAAGTGTTGGAAAGGCTTAAGGATATTCAGAGTgatgaaatatataaatgtaaaccTGAGGTGTTGGATATCTCAGTAAATGATGATATTACTTTGATAAAAAATGaaccaccaccatcatcacCAGATTCAAATATCATTATTAATTTCACCTGA 1983 0.3535 MALFIHDNHFHIISLFLFLFLIILPTSISQQQLNKYEECLIPYTCGGLSEYYPFWGENRQNYCGSNVNTDQFHLKCDSQNTSIQIASQNFQVLHIDQLGYNITMFRKGLVYDNCSSALTNTSLDLRHFQYMPNVKNITILYNCTNDIEFLNGMKANVSSFSCKEDEKKRAFYADSAIAKGIKCDGVRIEVQVTQEVEHGDGIEELNKALNNGFDVKYFSNSQECLKCILSNGTCGGNDKSQFSCYCPDGTEGLDCSHLHDNGWNWKKKFGVVAVAAVASAIFVGIAFYIYYGRKKKKNIRAVSSTVLSRSISSSSSEDSENGSRYHGVHFFTYSELEKATNNFDSIRALGDGGFGTVYFGKLRDGRLVAVKRMNENNYRRVEQFVNEVEILTGLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKKAKPGMLPWHIRMNIAIETASALVYLHATDIIHRDVKTTNILLDNHFSVKVGDFGLSRLFPIHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELISSMPAVDILRKRQDINLSNMAIKKIQNGTLHELVDPTLGFESDFKIRKMINAVAELAFQCLQSSKDVRPSMVEVLERLKDIQSDEIYKCKPEVLDISVNDDITLIKNEPPPSSPDSNIIINFT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01324 660 Pfam Wall-associated receptor kinase C-terminal 181 249 IPR032872 -
Tsu02g01324 660 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 655 IPR044652 -
Tsu02g01324 660 Gene3D Phosphorylase Kinase; domain 1 312 419 - -
Tsu02g01324 660 Pfam Protein kinase domain 344 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01324 660 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 13 655 - -
Tsu02g01324 660 CDD STKc_IRAK 349 618 - -
Tsu02g01324 660 Pfam Wall-associated receptor kinase galacturonan-binding 44 103 IPR025287 GO:0030247
Tsu02g01324 660 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Tsu02g01324 660 SMART serkin_6 343 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01324 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Tsu02g01324 660 ProSiteProfiles EGF-like domain profile. 220 256 IPR000742 -
Tsu02g01324 660 Gene3D Transferase(Phosphotransferase) domain 1 420 629 - -
Tsu02g01324 660 ProSitePatterns EGF-like domain signature 1. 244 255 IPR000742 -
Tsu02g01324 660 SUPERFAMILY Protein kinase-like (PK-like) 325 644 IPR011009 -
Tsu02g01324 660 ProSiteProfiles Protein kinase domain profile. 343 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01324 Tsu-Chr2 11538080 11540785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01324 43 659 Receptor kinase-like Gene Family AT1G25390 42.516 1.36e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu02g01324 Pkinase 5.9e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01324 02 11538080 11540785 Tsu02g01324 02 11538080 11540785 ECH