Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00133 ATGGACGACGTAAAAGACAAGGTTAAAGGTTTCATGAAGAAAgtaacttcttcttcttcctctggcAAATTCAAGGGCCAAGGTAGAGTCTTGggttcttcttcatcttcttcttcatccacaCCTGTTAATTCCATTCCTACCCCTCGCCCATCACCCTCTCCCTCTCAGAATCCCAATcccaaacctaaccctaatccTAATCCCAAACCCACTTCACCGATTGCTTCAAATCCTAGCAAAATCGACAAGCCTCGTAAAACTGGAGATGGGTTTGACCCATTTGATGCTTTGGTCACTTCATCTCAGAGATCTAAAAATGGGTATTCACTTAATGTATATGAATGCCCCATTTGTAAAACACCTTTTCGATCCGAAGACGAAGTTTCTGAACACGTCGAAAATTGTTTGAGTAACCCAgttgataataatgataatgatgaaaaATGTGTCTCAAAGAGTGAAGAAATCGTTGAGTCTAATAATACTGAATTGGAGATTTGTATTGGTACTTATGTTTCAGGGAATCCATCTAATGGATCAGTTGATATTGTTTTGAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAATGTTAAGTTTAGGAAAATTAGGTTGAGTAATCCGAAGATTAAAGAAGCTGTTGCTGAGGTTAATGGTGGGATTGAATTGCTTAGCTTTTTAGGGTTTGAACTTAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCTACAGAGGAGAAAGTTAAATTGATTAAGAAAGCAATTGTGTTGTTGGAACCACAGCTGGTACAAGATCCTCCAAAGAGGGACAATTTGGTGTCTACAGCTTCTGCTGAGAAAGTAGTCGAGGCCGAACCGGCCGAACCAGCTGAACCAAAAAAGATTGACAGACAGGTGAAGGTCTTCTTTGCTGTCGCTGAAAGTGTTGCAGCTAAAATTGAGCTACCGGATACCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAActaaggaaaaaaaagtttgaagaGTCTCAGCTTTTAATCCCCAAGTCATTTAGAGAAAAGCAAGCTAAAGCTGCAAAGAAGAGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGGAGCTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTTCTGCTCTCTATGAGTTTGTCAGTTCCTCTATAAAAGAACCCAGTTTGGAATTTGAGCTAATGCATCCTGTCGTTGTTCAACGGCGAGTTATCCCATGTTTTCCAAAAGCAGGGCAAAAAGCTAAAACTATTGAGGAAGAAGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCTCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1422 0.3713 MDDVKDKVKGFMKKVTSSSSSGKFKGQGRVLGSSSSSSSSTPVNSIPTPRPSPSPSQNPNPKPNPNPNPKPTSPIASNPSKIDKPRKTGDGFDPFDALVTSSQRSKNGYSLNVYECPICKTPFRSEDEVSEHVENCLSNPVDNNDNDEKCVSKSEEIVESNNTELEICIGTYVSGNPSNGSVDIVLKLLRNIVKEPENVKFRKIRLSNPKIKEAVAEVNGGIELLSFLGFELREENGETWAVMEVPTEEKVKLIKKAIVLLEPQLVQDPPKRDNLVSTASAEKVVEAEPAEPAEPKKIDRQVKVFFAVAESVAAKIELPDTFYKRSAEEVRREAELRKKKFEESQLLIPKSFREKQAKAAKKRYTRTIIRIQFPDGAVLQGVFAPWEPTSALYEFVSSSIKEPSLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00133 473 Pfam UBX domain 362 412 IPR001012 GO:0005515
Tsu02g00133 473 Gene3D - 174 262 - -
Tsu02g00133 473 CDD PUB 181 262 - -
Tsu02g00133 473 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 472 - -
Tsu02g00133 473 MobiDBLite consensus disorder prediction 1 97 - -
Tsu02g00133 473 MobiDBLite consensus disorder prediction 13 45 - -
Tsu02g00133 473 MobiDBLite consensus disorder prediction 46 74 - -
Tsu02g00133 473 Gene3D - 356 449 - -
Tsu02g00133 473 SUPERFAMILY PUG domain-like 176 261 IPR036339 -
Tsu02g00133 473 Pfam PUB domain 179 254 IPR018997 -
Tsu02g00133 473 ProSiteProfiles UBX domain profile. 362 446 IPR001012 GO:0005515
Tsu02g00133 473 SUPERFAMILY Ubiquitin-like 333 446 IPR029071 -
Tsu02g00133 473 SMART PGNneu 180 247 - -
Tsu02g00133 473 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00133 Tsu-Chr2 947968 951377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00133 1 394 C2H2 Transcription Factor Family AT2G01650 56.691 2.69e-151 434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00133 02 947968 951377 Tsu02g00133 02 947968 951377 ECH