Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00123 ATGACTCTGATTCTCTCCTCCTTCAATTGTCCTCCAATGTTCCCGCATTTGGCAGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCGAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCCATCTTTTTTCCTGGGGAAGACATTAAGAATTTACAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGATCAACAAGTCAAGCGTGCATTAGCCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAGGTAGACGCTTCATCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCATGGCAACAAGCAATCAAATGGGATAGACTTCGATATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCGAATGCTAGAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAACAAGATGATCCTTTATTGCTTTGCTATGGAGGTTTAAGCAATGATCTCTTCATTCTTGATTATGGATTTGTGATACATTCAAACCCTTATGACTGTATTGAGCTTAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCGCCAAACTTCTCCACACCTGCTCCATGGCAACAACTTGTTTTATCTCAGCTAAATCTAGCTGGAGAATCTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATCGCAGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCAGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGAGGCAGTTACTGCTGAAGGCTAA 1164 0.4192 MTLILSSFNCPPMFPHLADELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFDQQVKRALAGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGIDFDIPMMLPLIDMCNHSFNPNARIVQEQETGSTKMRVKVVAEKAIKQDDPLLLCYGGLSNDLFILDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQQLVLSQLNLAGESPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLLSSKEAVTAEG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00123 387 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 202 381 IPR036464 -
Tsu02g00123 387 CDD SET_LSMT 18 206 - -
Tsu02g00123 387 SUPERFAMILY SET domain 5 210 IPR046341 -
Tsu02g00123 387 Pfam SET domain 33 192 IPR001214 GO:0005515
Tsu02g00123 387 Pfam Rubisco LSMT substrate-binding 242 362 IPR015353 -
Tsu02g00123 387 Gene3D - 242 383 IPR036464 -
Tsu02g00123 387 ProSiteProfiles SET domain profile. 94 192 IPR001214 GO:0005515
Tsu02g00123 387 Gene3D set domain protein methyltransferase, domain 1 3 205 - -
Tsu02g00123 387 PANTHER F21J9.27 18 384 - -
Tsu02g00123 387 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 18 384 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu02g00123 SET 4.2e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00123 02 866056 869461 Tsu02g00123 02 866056 869461 ECH