Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00112 ATGTCGTCGTGGGAAGACGAAATTGTGATTCGTGATGTCACCAATGCCGGTCTTGTTGTCAGTGATCGTATTGGCCGTGAAGTTTCTTCTCAGCTCGACCTCGAAGAATCTCTAGAAGCTTCCAGATATGCTAGTCATCCTTATTCTACTCACCCTAGAGAGTGGCCTCCTTTGGTTGAGGTAGCGAATACCTGGGAGTTGCCTCCTGTTCTTATTGAAAGATACAATGCTGCTGGCGGGGAAGGGACCGCTTTTTGTGGAATATTTCCTGAAATACGTAGAGCATGGGCGTCCGTGGACAATTCTTTGTTTCTCTGGCGTTTTGATAAGTGGGATGGCCAGTGTCCCGAATATAGTGGGGAGGAACAAGCTATTTGTGCCGTTGGTCTTGCAAAATCAAAGCCTGGTGTTTTTGTTGAAGCTATCCAATATCTTTTAATCTTAGCAACCCCTGTTGAGTTAATTTTAGTTGGAGTGTGCTGCTCTGGAGGGGCAGATGGCTCAGATCCATTTGCAGAAGTTTCATTACAGCCATTGCCAGATTATACAATACCATCTGATGGGGTTACGATGACATGTGTTGCGTGTACTGATAAGGGCCGCATTTTCCTTGCTGGCCGTGATGGCCACATATATGAGCTTCTTTATTCAACTGGCTCAGGATGGCAAAAGCGCTGCAGAAAAGTTTGTGTCACTGCTGGTCTAGGAAGTGTAATTTCCAGATGGGTCATACCAAATGTATTCAATTTTGGAACTGTTGACCCTATTGTTGAAATGGTTTTTGACAACGAGAGACAGATATTGTATGCACGGACTGAAGAGATGAAGCTTCAGGTTTATGTTCTTGGACCAATTGGTGATGGGCCATTAAGGAAAGTTGCCGAAGAAAGGAATCTTGTCAATCAGAGAGATGGACATCATGGAGCTAGACAATCAAGTGGTTCAAGAGCATCAAGTCGATCACCGAAGCCATCTATTGTTTGCATCTCACCCTTATCTACACTTGAATCCAAATGGCTACATCTTGTTGCTGTTTTATCAGATGGAAGGAGGATGTACCTATCCACCTCTCCTTCTAGCGGAAGCCTGAATGGATTCAACACCAACCATCATAAGCCCAGCTGTTTAAAAGTTGTCACAACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGTGGTCTCACCTTTGGAACCATGGCTCTTGCTGGTAGACCTCAAAATGAGGATCTCTCACTGAAAGTTGAGGCGGCCTATTATTCTGCTGGAACTCTTATCCTTTCTGATGCATCACCTCCAACTATTCCTTCACTCCTTGTTTTAAACAGGGATTCAAGCACACAGTCATCACAATCGGGTAATCTAGGGACAGGTACAAGGAGTTCCCGAGCATTACGGGAATCAGTATCTTCTTTACCAGTTGAAGGACGCATGCTTTCTGTGGCCGATGTTTTACCCCTACCTGATACTTCAGCTACAGTGCAGTCTCTTTATTCAGAAATTGAGTTTGGTGGTTATGAGAGCTCAATGGAATCGTGTGAAAGGGCGTCTGGCAAACTGTGGGCAAGGGGAGATCTCTCAACCCAACATATATTGCCACGGAGGAGGATTGTCATCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTAGACATTTTAAGGCGGCTATTAGAGTCCAATTCTCCAAGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCTGGTGAGGCAGCTGCCATGTGTTTAATGCTAGCTGCGAGGATAGTACATTCTGAAAACTTTATCAGCAATGTTATTGCTGAGAAAGCTGCTGAAGCTTTTGAGGACCCAAGACTTGTTGGCATGCCACAACTTGAAGGCAGTAATGCATTATCAAACACAAGAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTTTTTTCAGGTGCGCATGAAGGGCTCTGTTTGTGTTCGTCTAGATTACTCTTTCCTCTATGGGAGCTACCTGTAATGGTTATAAAAGGAAGTTTAGGTGATTCAGGCACTTCATTTGAAAATGGGGTAGTTGTATGCAGACTATCCGTTGGGGCTATGCAAGTCCTTGAACACAAACTTCGATCTTTAGAAAAATTCTTAAGATCTAGAAGGAACCAGAGGAGGGGACTTTATGGCTGTGTAGCAGGATTAGGAGATGTAAGTGGTTCTATTCTATATGGTAGTGGTTCTGCATTGGGTGCTGGTGACCGAAGTATGGTAAGAAACTTGTTTGGTGCATATTCCCGAAATATGGAGTCCAATGGTGGTGGTGCCACAAATAAAAGGCAAAGGTTGCCATATAGTCCTGCAGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGCGAAGCTCTGTTTTTGCTTCAACTTCTTTCACAGCACCATGTCACTCGTTTGATTCAGGGATTTGATGCTAACCTTCAGCAGGCCTTAGTTCAGTTAACATTTCATCAATTAGTTTGTTCTGATGAGGGTGACCGTCTTGCTACAAGGCTTATATCTGCTCTGATGGAGTATTACACTGGTACAGATGGCAGGGGAACTGTAGATGACATTAGCAAGAGGTTAAGAGAGGGTTGTCCGAGCTACTATAAGGAGTCTGATTACAAATTCTTCTTAGCTGTGGAAGCCCTGGAGAGAGCTGCTGTAACTATAGATGATGAGGAAAAGGAGACTCTTGCGCGGGAGGCATTGAATTCCTTAAGCAAAGTTCCAGAGTCTGCAGACTTACGAACAGTTTGCAAACGTTTTGAGGATTTAAGGTTTTATGAAGCTGTAGTGTGTTTGCCTCTTCAGAAGGCACAGGCTATCGACCCTGCAGGTGATGCTTATAATGATGAAATTGATGCAACAGTCAGAGAACAAGCACTTTCTCAGCGTGAACAGTGTTATGAGATAATCATCAGTGCTTTGCGATCTCTTAAAGGTGACGCCTTGCGGAAGGAATTTGGCTCTCCCATTAGATCTGCTTCCCAATCTGCACTTGATCCAGCCTCTCGGAAAAAGTATATAAGCCAAATCGTTCAGCTGGGTGTCCAATCACCTGACAGAATTTTCCATGAGTATCTTTACCAAGCTATGATCGATTTAGGTCTTGAGAATGAATTGTTAGAGTATGGAGGCCCTGACCTGTTGTCATTTTTACAAAGTGCTGGTCGTAAACCCATACACGAGGTTCGTGCTGTGACTGCAACAACTTCTCCAATGGGCCAATCAGGAGCACCTATGTCGCCTAATCAAGTCAAGTACTATGAACTTCTGGCACGGTATTATGTGTTGAAGCGGCAACATATGCTGGCTGCTCATGCATTGCTAAGATTAGCTGGAAGGCCTTCTACTGACGGAGTACCTACTCTTGAGCAGAGGTGTCAATACCTAAGCAATGGAGTTTTACAAGCAAAGAATGCAAATAATAGTAATGGGTTGGTTGGTTCTACTCAGAGTTCCAGTGACACTGGATTACTAGATATGCTTGAAGGGAAGCTTGCTGTTCTTCGGTTTCAGATAAAAATCAAAGAGGAACTAGAGGCTATGGCTTCCAGTTCTGAGGTTTTACACAGCACATCCAATTCTGTTGAAAATGGTTTAGTCCCCGAAACAAGTTCAACTGTTGATGCCAATTTTGCAAATGCAGCACGAGAGAAAGCAAAAGAGCTATCGTCAGATTTGAAGAGCATAACACAGTTATATAATGAATATGCTGTTCCCTTTAAGCTCTGGGAGACATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGTGATAGTGACAGTAGCATTGTCAGAGAGACATGGGCTAGACTTTTAGATCAAGCTATTTCAAGTGGTGGCATTGCTGAAGCTTGCTCAGTGCTAAAGAGAGTTGGGCCCCGCCTCTATCCGGGTGATGGAACTGTTTTACAGCTTGACATTATTTGTCTTCACCTGGAGAAGGCTGGACTGGAGAGGTTAAATTCAGGGGTTGAATCTGTTGGAGATGAAGATGTTGCGAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCAGAACCTGTATTGAACGCATATGATCAATTGTTATCAAATGGAGCaattttgccatccccaaatCTTAGATTGCGGATGCTGAGATCAGTTCTAGTGGTACTTCGTGAGTGGGCTATGTCTATATATTCACACAGGATGGGAACAGGTGCCCCTGGGTCTTCCCTACTACTAGGTGGAGGATTCTCATTGGAACGTACAGTTGCTAGCCAAGGAATTCGGGACAAGATCACAAGTGTGGCAAACAgGTATATGACTGAAGTACGGAGGTTAGCGCTTCCACAGAGCCAAACAGAAGCGGTTTACCGAGGTTTTAAAGAACTTGAAGAGTCGCTCATAAGTCCTCATTCTTTCAATCGATTTTGA 4458 0.4417 MSSWEDEIVIRDVTNAGLVVSDRIGREVSSQLDLEESLEASRYASHPYSTHPREWPPLVEVANTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLILATPVELILVGVCCSGGADGSDPFAEVSLQPLPDYTIPSDGVTMTCVACTDKGRIFLAGRDGHIYELLYSTGSGWQKRCRKVCVTAGLGSVISRWVIPNVFNFGTVDPIVEMVFDNERQILYARTEEMKLQVYVLGPIGDGPLRKVAEERNLVNQRDGHHGARQSSGSRASSRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLNGFNTNHHKPSCLKVVTTRPAPPWGVSGGLTFGTMALAGRPQNEDLSLKVEAAYYSAGTLILSDASPPTIPSLLVLNRDSSTQSSQSGNLGTGTRSSRALRESVSSLPVEGRMLSVADVLPLPDTSATVQSLYSEIEFGGYESSMESCERASGKLWARGDLSTQHILPRRRIVIFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENFISNVIAEKAAEAFEDPRLVGMPQLEGSNALSNTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVIKGSLGDSGTSFENGVVVCRLSVGAMQVLEHKLRSLEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGSGSALGAGDRSMVRNLFGAYSRNMESNGGGATNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDANLQQALVQLTFHQLVCSDEGDRLATRLISALMEYYTGTDGRGTVDDISKRLREGCPSYYKESDYKFFLAVEALERAAVTIDDEEKETLAREALNSLSKVPESADLRTVCKRFEDLRFYEAVVCLPLQKAQAIDPAGDAYNDEIDATVREQALSQREQCYEIIISALRSLKGDALRKEFGSPIRSASQSALDPASRKKYISQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLSFLQSAGRKPIHEVRAVTATTSPMGQSGAPMSPNQVKYYELLARYYVLKRQHMLAAHALLRLAGRPSTDGVPTLEQRCQYLSNGVLQAKNANNSNGLVGSTQSSSDTGLLDMLEGKLAVLRFQIKIKEELEAMASSSEVLHSTSNSVENGLVPETSSTVDANFANAAREKAKELSSDLKSITQLYNEYAVPFKLWETCLEMLYFANYSGDSDSSIVRETWARLLDQAISSGGIAEACSVLKRVGPRLYPGDGTVLQLDIICLHLEKAGLERLNSGVESVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSPNLRLRMLRSVLVVLREWAMSIYSHRMGTGAPGSSLLLGGGFSLERTVASQGIRDKITSVANRYMTEVRRLALPQSQTEAVYRGFKELEESLISPHSFNRF 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00112 1485 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 873 1292 IPR007187 -
Tsu02g00112 1485 MobiDBLite consensus disorder prediction 300 324 - -
Tsu02g00112 1485 Gene3D - 1180 1461 IPR042538 -
Tsu02g00112 1485 Gene3D Nucleoporin, helical domain, central subdomain 1057 1154 IPR042537 -
Tsu02g00112 1485 PANTHER BNAC05G49530D PROTEIN 3 1482 - -
Tsu02g00112 1485 Gene3D - 895 1054 IPR042533 -
Tsu02g00112 1485 MobiDBLite consensus disorder prediction 443 464 - -
Tsu02g00112 1485 MobiDBLite consensus disorder prediction 305 324 - -
Tsu02g00112 1485 Pfam Nup133 N terminal like 55 544 IPR014908 -
Tsu02g00112 1485 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 3 1482 IPR004870 GO:0005643|GO:0006913|GO:0017056
Tsu02g00112 1485 Gene3D - 532 884 - -
Tsu02g00112 1485 Coils Coil 1233 1253 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00112 02 796448 806043 Tsu02g00112 02 796448 806043 ECH