Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00103 atgGCTATGGCAAGAGATaaaaaagatgatgaagaagaggttcataatcaaaataaaaaaagtgggaAGAGATTGAAATGCATGaacaagatgaagaagaatgaacaagaaaaacaagTTGTAATTGATGAAGTAGTGGAAGAAAGTGAACTTCCATTAAAACCAGACCTTTTCTTCTACCCAACAACACCAACATCttttgttgttgctgatgcacTTGAATCAGATTTTCCCATAATTTATGTTAACAAAGTCTTTGAAATCTCAACTGGGTATCGTGCTCATGAAGCTCTTGGTAGAAACTGTCGATTCTTACAATATAGAGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCAGTTGTTGTGTCGGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTAAACAGACTGAGACTTACACCGATTCATGACGATGATGGAATTGTGACACACGTAATAGGTATCCAAATATTTTCCGAGGCAAACATAGATCTTAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCaagattttgataaaaatgcTAAATATTCTCCCAAGAGTGGAAAGTTATTGTACAGTCCGCAGCAGCGCGAAGAGATGTGCGGCATTCTTCAGCTTTCTGATGAAGTCTTAGCACACAACATTTTGTCACGCTTGACACCTAGGGATGTTGCATCAATTGGTTCTGTTTGCAGGAGAATCCGTCAATTAACAAAGAATGAGCATGTTAGGAAGATGGTTTGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACAAAGAAGTTGGGATGGGGTCGTCTGTCTCGGGAGCTTACTACTCTCGAGGCTGTTTGCTGGAAAAAAGTGACAGTTGGAGGTGGGGTTGAGCCTTCGCGCTGCAATTTCAGTGCTTGTGCCGCAGGAAATAGGCTTGTATTGTTTGGAGGTGAGGGAGTTGATATGCAGCCTATGGATGACACTTTTGTACTAAATCTTGATGCTAAAAATCCAGAATGGCAAAGGGTTAGCGTGAAATCATCCCCGCCTGGACGGTGGGGCCACACGCTCTCTTCCTTAAATAATTCTTGGCTGGTGGTTTTCGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTCGATTTGGATGCTCAACAACCAACATGGAAGGAAGTATTCGGCGGAGCACCACCTCTTCCAAGATCATGGCACAGCTCTTGCACAATTGAAGGTTCTAAATTGGTTGTCTCGGGTGGTTGCACAGATGCTGGAGTACTTCTTAGCGACACATACTTACTAGACCTTACAATAGATAATCCTACATGGAGAGAAATTCCAACTTCATGGAATCCACCTTCTAGGTTAGGACACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCAGAATGGAGGCAACTAGAATGTAGTGCATTCACTGGATTAGCAAATCAAAATGCTGTTGTACCTCCTCCTAGATTAGATCATGTTGCTGTAAGCATGCCTTGTGGGAGGGTCATTATATTTGGAGGTTCCATTGCAGGTCTTCATTCACCGTCTCAGCTATTTCTATTGGATCCAGCTGAAGACAAACCATCATGGAGGATTCTCAATGTTCCCGGGGAACCACCTAAATTTGCCTGGGGTCATAGCACTTGTGTGGTTGGCGGGACTAGGGTTTTGGTGTTGGGTGGACATACCGGAGAGGAATGGGTACTCAATGAATTGCATGAGTTATGCTTGGCAAGCCGACAAGACTCCGACATGTGA 1917 0.4111 MAMARDKKDDEEEVHNQNKKSGKRLKCMNKMKKNEQEKQVVIDEVVEESELPLKPDLFFYPTTPTSFVVADALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGIVTHVIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYSPQQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLSRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVKSSPPGRWGHTLSSLNNSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWNPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPEWRQLECSAFTGLANQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEDKPSWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00103 638 SUPERFAMILY Kelch motif 306 523 IPR015915 GO:0005515
Tsu02g00103 638 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g00103 638 PANTHER ADAGIO PROTEIN 3 15 636 - -
Tsu02g00103 638 SUPERFAMILY F-box domain 219 300 IPR036047 GO:0005515
Tsu02g00103 638 Pfam Galactose oxidase, central domain 319 369 - -
Tsu02g00103 638 CDD PAS 63 173 IPR000014 -
Tsu02g00103 638 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 15 636 - -
Tsu02g00103 638 TIGRFAM sensory_box: PAS domain S-box protein 75 173 IPR000014 -
Tsu02g00103 638 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 174 IPR035965 -
Tsu02g00103 638 SUPERFAMILY Kelch motif 473 630 IPR015915 GO:0005515
Tsu02g00103 638 Pfam Galactose oxidase, central domain 384 431 - -
Tsu02g00103 638 Pfam Galactose oxidase, central domain 433 484 - -
Tsu02g00103 638 Gene3D - 218 269 - -
Tsu02g00103 638 Gene3D - 500 632 IPR015915 GO:0005515
Tsu02g00103 638 SMART pac_2 138 179 IPR001610 -
Tsu02g00103 638 MobiDBLite consensus disorder prediction 1 31 - -
Tsu02g00103 638 Pfam F-box domain 225 262 IPR001810 GO:0005515
Tsu02g00103 638 Pfam PAS domain 73 174 IPR000014 -
Tsu02g00103 638 Pfam Kelch motif 543 590 IPR011498 GO:0005515
Tsu02g00103 638 Gene3D - 300 499 IPR015915 GO:0005515
Tsu02g00103 638 Gene3D PAS domain 60 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00103 Tsu-Chr2 746446 749459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00103 66 187 AGC Kinase Gene Family AT5G58140 33.065 1.61e-12 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00103 02 746446 749459 Tsu02g00103 02 746446 749459 ECH