Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00081 atggtaaaagTTGAATTGGGTTTTGGAGGCTCATTCAAtctttttgttttacttttggtgttttttgttttggttataTCAACAAGGTGTCAAGATGATGATGTAAATgtaatgaatattttgaaaagcAGCATAAATGCTCCAATTTCACTCCAATGGACAAATCCCGATGTATGTAAATGGATGTACATTACTTGCGAGAGAAGTCGTGTCACTAGTATTAAATTACCGAGCAAAAACCTTCAAGGCTCTCTCCCGAAAGAACTTGTGAAGCTGACAGCGTTGCAACATTTTGAGTGCCAAGGCAATGGCCTCACAGGTCCATTCCCTTACCTCTCGAAATCCTTACAGAGTCTTATAATCCACGATAATAAATTCACCTCCATTCCTAGCAATTTCTTCGCAGGAATGGGAAATTTGCAAGAAATAAATATGGACGACAACCCCTCCTTGTATCCATGGCAAATTCCTAATTCTCTAAGAGATTGCGTTGCACTCCAAAATTTCAGTGCTCATAATGCTGGCATTGTTGGGACCATTCCTGATTTTTTTGGCAGAGACGGTCCCCTCACTGGGTTGGTTTTTTTGGAATTATCTAGTAACCATCTAGGAGGTGTACTGCCTGCAAGTCTTTCTAGAGGTTCAATAGAGTTTCTTTTGGTGAATGGACAAAATATGACCGGTACCCTGGATGTGTTACAAAACATGACatctttgaaaaaaatatggGTTAATGACAATTCATTTACAGGACCTATACCCGATGTGTCAGGCCTTAAACAACTGTCTGATATAAATTTAAGAGATAACCAGTTGACTGGTGTTGTTCCATCTTCTTTAGTTAATCTTCCAAACTTGCAAGTGGTGAAATTAACCAACAATTATCTCCAAGGTTCACCTCCCATGTTTAGAGTTGGAGTTGTAGTTGATAATAATCTGGTTGGGAGTAGAAATCAGTTTTGCACAAATGTTCCAGGGCAACCATGTAGTCCTCTTGTGAATGCTTTACTATTAGCTATTGAACCTTTGAGTTATCCTCTCCAGTTCGCTGAAAGTTGGCGGGGTAATGATCCTTGTGTTAATAAATGGACTGGTATAATTTGTGCCGGTGGAAATATTTCAGTTATCAACTTTCAAAACATGGGATTAATTGGTCATATTTCTCCAAATTTTGTCAGTCTTTCATCTTTAACAAAATTACTTCTTGCAAACAATAGTCTCACGGGTACCATACCGAACCAACTTACCAGCATGCCTCTTTTACAAGAACTTGATGTTTCTAATAATCATTTGTATGGTCGTGTGCCATCATTTCCTAAAGGCGTTGTTCTTAAATTAGGTGGAAATCCTGATATTGGAAAGGATAAACCCAGCAGTACTAGTGGTGATAACTTTGGGTTTGGAGGTAGTGGTAACTTCAAAACTAATGGTGGCGGTGTCATCATCGGAATTATTTTGGGAATTGTCATTTTACTTTGTATTGGGGCACTAGTAGTTATTAAGTTTGGGAAAAGGTTGAGGATTCATAGGGGGATAGGTAAACATCCTCCTCCTGATGCTATAAAGGTACAAGATAAATATCAATGGGATGGAAATGATGTGAAGGTAAGTATGGTTAGCGGTGGTGAAGCAAGTGATGTATTTAGTACCACTGGTGGTAATGTTTATGAAGCTAGTAACATGGTGATTTCAATTCAAGTTTTGAGACAAGTTACATATAATTTTTGTGAGGAAAAAATAGTAGGGAAGGGTGGTTTTGGCACTGTTTACAGAGGGGAATTGCATGATGGGACACAGATTGCAGTTAAAAGGATGCAATCAGGAATGGGGGATGAGAAAGGATCAAATGAATTTACGTCGGAGATTGCAGTTCTTACAAAGGTTCGACACAAACATTTGGTTTCACTATTAGGGTATTGCTTGGATGGAGATGAAAGACTTTTGGTTTATGAGTACATGCCTCAAGGTGCTTTGAGTAGACATTTGTTCAATTGGAAAGAGGAAGGGATAAAACCACTAGAATGGAAGACAAGGCTTATTATTGCCTTGGATGTTGCTAGGGCTGTGGAATATCTTCATGGGTTTACCCAACAAATTTTTATCCACAGGGATCTCAAACCATCCAACATTTTGCTTGGAGATGATATGCGGGCTAAAGTATCTGACTTTGGATTGGTGCGCCTTGCTCCTGAAGGAAAAATTTCATTTCAAACTAGACTTGCTGGAACTTTTGGATATATGGCACCAGAGTATGCAGTCACCGGAAGACTAACAACAAAGGCCGACGTGTATAGTTTTGGTGTGATTCTAATGGAGATCATAACAGGAAGGAAAGCTCTCGATGATAGCCAACCAGAAGAGAATGTCCACCTTGTTACATGGTTCCGTAGGATGTTATTGAATAAGGGTTCATTTCGAACAGTCATTGACCATACAATTGAGGTTGACGAAGAAACCTATGCAAGTATCAATACAGTTGCTGAATTGGCAGGACATTGTAGTGCAAGGGAGCCTCATCAACGGCCTGACATGAGTCATGCTGTGAATGTATTATCTTCTCTTGTTGAAGTGTGGAAGCCTGCGGAACAAAATGTTGATGACATATATGGAATCAACTTTGATATGACATTACCAGAAGCTCTTCAAAGGTGGCAAGCTTTCGAAGGAAGAAGCACTCTTGATTTAACTCTTTCTCCCTCGCCAATGCAAACTACTGGAGACAATTCACACACTTCTGAATCCCCAAACGTGTCTTCAGATGCACGAAAGTGA 2772 0.386 MVKVELGFGGSFNLFVLLLVFFVLVISTRCQDDDVNVMNILKSSINAPISLQWTNPDVCKWMYITCERSRVTSIKLPSKNLQGSLPKELVKLTALQHFECQGNGLTGPFPYLSKSLQSLIIHDNKFTSIPSNFFAGMGNLQEINMDDNPSLYPWQIPNSLRDCVALQNFSAHNAGIVGTIPDFFGRDGPLTGLVFLELSSNHLGGVLPASLSRGSIEFLLVNGQNMTGTLDVLQNMTSLKKIWVNDNSFTGPIPDVSGLKQLSDINLRDNQLTGVVPSSLVNLPNLQVVKLTNNYLQGSPPMFRVGVVVDNNLVGSRNQFCTNVPGQPCSPLVNALLLAIEPLSYPLQFAESWRGNDPCVNKWTGIICAGGNISVINFQNMGLIGHISPNFVSLSSLTKLLLANNSLTGTIPNQLTSMPLLQELDVSNNHLYGRVPSFPKGVVLKLGGNPDIGKDKPSSTSGDNFGFGGSGNFKTNGGGVIIGIILGIVILLCIGALVVIKFGKRLRIHRGIGKHPPPDAIKVQDKYQWDGNDVKVSMVSGGEASDVFSTTGGNVYEASNMVISIQVLRQVTYNFCEEKIVGKGGFGTVYRGELHDGTQIAVKRMQSGMGDEKGSNEFTSEIAVLTKVRHKHLVSLLGYCLDGDERLLVYEYMPQGALSRHLFNWKEEGIKPLEWKTRLIIALDVARAVEYLHGFTQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKISFQTRLAGTFGYMAPEYAVTGRLTTKADVYSFGVILMEIITGRKALDDSQPEENVHLVTWFRRMLLNKGSFRTVIDHTIEVDEETYASINTVAELAGHCSAREPHQRPDMSHAVNVLSSLVEVWKPAEQNVDDIYGINFDMTLPEALQRWQAFEGRSTLDLTLSPSPMQTTGDNSHTSESPNVSSDARK 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00081 923 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Tsu02g00081 923 SMART serkin_6 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00081 923 MobiDBLite consensus disorder prediction 895 923 - -
Tsu02g00081 923 Gene3D Ribonuclease Inhibitor 332 456 IPR032675 -
Tsu02g00081 923 CDD STKc_IRAK 581 854 - -
Tsu02g00081 923 PANTHER OSJNBA0070M12.3 PROTEIN 15 916 - -
Tsu02g00081 923 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 15 916 - -
Tsu02g00081 923 SUPERFAMILY Protein kinase-like (PK-like) 558 860 IPR011009 -
Tsu02g00081 923 SMART LRR_typ_2 394 417 IPR003591 -
Tsu02g00081 923 SMART LRR_typ_2 190 214 IPR003591 -
Tsu02g00081 923 SMART LRR_typ_2 114 136 IPR003591 -
Tsu02g00081 923 SMART LRR_typ_2 259 282 IPR003591 -
Tsu02g00081 923 SMART LRR_typ_2 418 445 IPR003591 -
Tsu02g00081 923 SMART LRR_typ_2 283 305 IPR003591 -
Tsu02g00081 923 Gene3D Transferase(Phosphotransferase) domain 1 653 874 - -
Tsu02g00081 923 Pfam Protein tyrosine and serine/threonine kinase 578 849 IPR001245 GO:0004672|GO:0006468
Tsu02g00081 923 Pfam Leucine rich repeat N-terminal domain 32 66 IPR013210 -
Tsu02g00081 923 Pfam Leucine rich repeat N-terminal domain 335 368 IPR013210 -
Tsu02g00081 923 Gene3D Ribonuclease Inhibitor 31 325 IPR032675 -
Tsu02g00081 923 Gene3D Phosphorylase Kinase; domain 1 542 652 - -
Tsu02g00081 923 SUPERFAMILY L domain-like 44 438 - -
Tsu02g00081 923 MobiDBLite consensus disorder prediction 895 916 - -
Tsu02g00081 923 ProSiteProfiles Protein kinase domain profile. 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00081 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00081 Tsu-Chr2 526328 529261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00081 71 857 Receptor kinase-like Gene Family AT5G07280 31.089 9.78e-84 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tsu02g00081 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00081 02 526328 529261 Tsu02g00081 02 526328 529261 ECH