Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01183 atgggaAAGGTTCATATGAggttgttcttgttcttgttcatGTTctgttcttttcattttctagttctttcttcttctgtttCACCTAGAAATTTTCCCATTATACCCTTTGATGAAGGGTATACACCTTTGTTTGGAGACCATAACTTGATCATTCATTCTGATGCCAAAACTGTTCATCTCTCACTTGATGAGTCTTCAgGCTCTGGATTTGCTTCTCATGATCTTTACCTTCATGGGTATTTCAGTGCTTCCATTAAATTACCTTCTGATTACACTGCTGGTGTTGTTGTTGCATTCTATTTGTCAAATGGTGACATGTATGAGAAGAACCATGATGAAATAGACTTTGAATTTTTGGGACACATTAGAGGCAAAGATTGGAAGGTTCAAACAAACATTTATGGAAATGGAAGTACAAACATTGGAAGAGAAGAAAGATATAGTCTATGGTTTGATCCTTCTGATGATTTTCATCAGTACAGTATTCTATGGACAGATTCTAAGATCATATTTTATGTAGATGATGTTCCGATAAGAGAAATAAAGAGAACAGAATCAATGGGAGGAGATTTTCCATCAAAGCCAATGACATTGTATTCTACAATTTGGGATGCATCTAATTGGGCTACCAATGGAGGAAAATACAAAGTAAACTACAAATATGCACCCTATGTTGCTGAGTTTTCTGATTTTGTCCTACATGGTTGTGCAGTTGATCCTATTGATCATGTGACAAACTGTGACACTAGTGTTCAAAGTTCCGAAACAGTTCATTCTGATGTAACACAAGTAGAAAGAATCAAAATGGAGCACTTTAGGTTAAAGCACATGACATATTCTTACTGTTATGACAAAATAAGATACAAAGTTCCTCTACCGGAGTGTGTGATCGATTTGCGAGAAGCTGAAAGACTGAGAAAATTTGATCCTGTTACGTTTGGTAATGGCAGGCACCGCCGTGGAAAGCGACACCACAACAAGGAAGATGCTGCTTCattttag 1005 0.3443 MGKVHMRLFLFLFMFCSFHFLVLSSSVSPRNFPIIPFDEGYTPLFGDHNLIIHSDAKTVHLSLDESSGSGFASHDLYLHGYFSASIKLPSDYTAGVVVAFYLSNGDMYEKNHDEIDFEFLGHIRGKDWKVQTNIYGNGSTNIGREERYSLWFDPSDDFHQYSILWTDSKIIFYVDDVPIREIKRTESMGGDFPSKPMTLYSTIWDASNWATNGGKYKVNYKYAPYVAEFSDFVLHGCAVDPIDHVTNCDTSVQSSETVHSDVTQVERIKMEHFRLKHMTYSYCYDKIRYKVPLPECVIDLREAERLRKFDPVTFGNGRHRRGKRHHNKEDAASF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01183 334 CDD GH16_XET 35 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu01g01183 334 PIRSF EndGlu_transf 2 300 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu01g01183 334 Pfam Glycosyl hydrolases family 16 39 221 IPR000757 GO:0004553|GO:0005975
Tsu01g01183 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 13 316 - -
Tsu01g01183 334 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 299 IPR013320 -
Tsu01g01183 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 316 IPR044791 GO:0004553
Tsu01g01183 334 Gene3D - 23 296 - -
Tsu01g01183 334 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 28 229 IPR000757 GO:0004553|GO:0005975
Tsu01g01183 334 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 260 296 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01183 Tsu-Chr1 10949642 10952990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01183 7 323 Glycoside Hydrolase AT1G14720 65.831 3.87e-163 456
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01183 01 10949642 10952990 Tsu01g01183 01 10949642 10952990 ECH