Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01178 ATGCCTCGTGGATTTCAAATTAGAGCAACTTCAGTTACTATATTTACACATTTGTTATTCATAGCAATAACAACACTTGTGTTAGTTTGGTTGTTCCATTTTCGTGAAGGTGTTGCTTTCAATTCTACCAAcaaaatcaagatttttaatCTTCATCCACTTCTTATGGTAATTGGGTTTATCTTAGTAGGTGGAGAAGCTATCGTGGCATACAAGTCCATCCCTGGAAAAAGAAACTCAGCAAAAATATTTCATCTTTTACTCCATCTGATAGCTCTAGCTTCTGGAATATTAGGAATTGTtgtaattttcaaatttaaaaaagagGCAGGTGTTCCTAATATGTTTACATTACACTCTTGGTTAGGCATCTCAGCAATCTCTGCATTTGGTTTGCAGTATATATTGGGCTTCTTTGCTTACTTCTTCCCAGGAGCAGAAGCTTCTACAAGAGCTACACTTCTACCATGGCACAAGTTTATAGGATTAGTGATCTTCTTGCTTGCAGTTGGTACAGCTGAAACTGGTTTGATTGAATATTTTGGATTTCTTGAACTGTTTAGAAACCAAGAAGCACTAATAGTGAATTTCACTGGTCTATTGCTCTTTCTGTTTTCTGTCTCTGTTGGTCTCTCTGTCATTCTCCCAAGAAATTACTGA 660 0.35 MPRGFQIRATSVTIFTHLLFIAITTLVLVWLFHFREGVAFNSTNKIKIFNLHPLLMVIGFILVGGEAIVAYKSIPGKRNSAKIFHLLLHLIALASGILGIVVIFKFKKEAGVPNMFTLHSWLGISAISAFGLQYILGFFAYFFPGAEASTRATLLPWHKFIGLVIFLLAVGTAETGLIEYFGFLELFRNQEALIVNFTGLLLFLFSVSVGLSVILPRNY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01178 219 Pfam Eukaryotic cytochrome b561 51 179 IPR006593 -
Tsu01g01178 219 Gene3D - 5 219 - -
Tsu01g01178 219 PANTHER CYTOCHROME B561-RELATED 6 216 IPR043205 GO:0016491
Tsu01g01178 219 SMART 561_7 51 177 IPR006593 -
Tsu01g01178 219 ProSiteProfiles Cytochrome b561 domain profile. 15 214 IPR006593 -
Tsu01g01178 219 PANTHER CYTOCHROME B561 FAMILY PROTEIN, EXPRESSED 6 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01178 Tsu-Chr1 10917038 10919875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01178 6 212 Chloroplast and Mitochondria Gene Families AT4G25570 45.972 1.70e-60 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01178 01 10917038 10919875 Tsu01g01178 01 10917038 10919875 ECH