Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01177 ATGATGATGACTCCGAATTTGAACCTTGAAGCTGAAAATAGTTTAGAAGTTAGCAGTCAAGTAGGTTCCAATGATCTTACCAAAGACAGTGCAACCACTTCTTCATGTCTTACAAATCTCACTAAGCCAGACAATAATCTAAGTTCTATTTCCCTTGACTTGAGTCTCAACTTCGATCCGAGCAACGGAGATTTGAAGGAAACAAGTGACACTAACAGTGAAGTAGTAGGAGCTGATCATGCTGATAATACTACTTCAGCGGCACCGATTCATAGAGTTTTCTCTTGTAATTATTGTAAGAGGAAATTCTTTAGCTCACAAGCATTAGGTGGACATCAGAATGCTCATAAACGAGAGAGGACAATGGCAAAACGCGCTATGCGAATTGGAATGTTCACCGAAAGGTATACGAGCTTAGCTTCTTTACCTCTTCAtggttcttcttcttttcattctctTGGTATTCAAGCTCATTCTGCAATGCACCAACAATACATGCCATCGTCTTCGTTGTCAATGAGGGCTCTCGAAATGAGAGCTACGGCAAAATTCGAGAAAGATTGTTTCGGAGCAGCACCGATGTTTATGCATAATGACGATGTTGGTATATTTTGGCCTGGAAGTTTCAGGCAGATAGATCAAAGTGTTCAAGCTCATAATTCAAATTTGAATACTAATTTTGTTGTAGCAACCGAACCTCCTCAACAAAAATCTACAGCTCCTGATCTCACTCTGAGGCTTTAA 744 0.3884 MMMTPNLNLEAENSLEVSSQVGSNDLTKDSATTSSCLTNLTKPDNNLSSISLDLSLNFDPSNGDLKETSDTNSEVVGADHADNTTSAAPIHRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRIGMFTERYTSLASLPLHGSSSFHSLGIQAHSAMHQQYMPSSSLSMRALEMRATAKFEKDCFGAAPMFMHNDDVGIFWPGSFRQIDQSVQAHNSNLNTNFVVATEPPQQKSTAPDLTLRL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01177 247 MobiDBLite consensus disorder prediction 1 31 - -
Tsu01g01177 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Tsu01g01177 247 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Tsu01g01177 247 PANTHER ZINC FINGER PROTEIN 3-RELATED 6 247 - -
Tsu01g01177 247 PANTHER ZINC FINGER PROTEIN JAGGED 6 247 IPR045320 GO:0003700
Tsu01g01177 247 Gene3D Classic Zinc Finger 73 140 - -
Tsu01g01177 247 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01177 Tsu-Chr1 10913654 10916231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01177 92 247 C2H2 Transcription Factor Family AT1G66140 45.304 2.23e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01177 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01177 01 10913654 10916231 Tsu01g01177 01 10913654 10916231 ECH