Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01162 ATGGGTTTCGGAGTTTCCTACGTTCTTCAACTTATGGTGCTGTTTTCTCTGATGTTTGTTTCTGCATGGTCTCAAGATGATGAAGTTGTTATGAAAAAACTGAAAACTACGATATCAAAAAATAATCTTGATTGGTCAAACAATGATTTTTGCAAATGGGAAAAAGTTCAGTGTAGTGGAACAAAGAGGGTTACTTCAATTGAACTTAAGAGTTCAACTGTTGAAGGTTATTTACCAGAAGAATTGGCGAAACTCACTGAGTTAACTTATTTTCGTTGCAGTGGAAATAGTTTATCTGGAGATTTTCCTCACATGCCAAATTCCCTTCAGAAGTTGTACATTGATAGCAACAAATTCACTTCCATGCCAAATGATTTCTTCACCAACATGAGTAATTTGATAGAGGTAGCAATTGATTATAACCCTTTTTCTCAATGGCAAATTCCTTCTAATCTTAAGAATTGTTTAGCCCTTCAGACTTTTTCTGCTGTGAATGTTAGTTTTGTTGGTGTAATTCCTGAATTCTTTGGAGAAGAAACTTTTCCAAGTTTGACTGCTTTGAAGTTGTCTTTTAATTCTCTTGAAGGTAATTTGCCTAATAGTTTATCTGGTAGTTCTATACAGTACCTTTGGGTGAATGGTCAAAAAAGTAATAAGAAACTCAATGGTACTctttttgttttacaaaataTGACATCATTGCAACAAATTTGGGTTCATGGCAATTCTTTTACCGGTCCTATACCTGATTTTTCAAATCTCGATCAACTGTATGATGTTAGTTTGAGGGATAATCAATTAAGCGGTGTTGTTCCATCGTCTTTAACTTCCCTTCAGAGTTTGAAAACTGTGAATTTGACAAACAATGATCTTCAAGGTTCACCTCCTAAGTTTCAAGACGGTGTTCAGGTTGATATGGATATGGATAGAGGGAGGCATAGCTTTTGCACTAAGGTTGTTGGTCAACCATGTAGTCAACTTGTTAATGTTTTACTTTCTGTTGTTGAACCTTTTGGTTATCCTCTTAAAATTGCTCAAAGTTGGAAAGATAATGACCCTTGTCATGGTCCTAATTGGTTAGGGATTGTTTGTTCTTCTAGGGGTACCATTATCATTATCGACTTTGAAAACAAGGGTTTTTCTGGTAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTGACGAAGTTGCGTCTTGCTAACAATAATCTGACAGGTACTATACCTAAGGAACTTGCTAGTATGCCGGTTTTGGAATTGTTAGATGTTTCCAATAATTCGTTGTATGGTCAGATACCGTCGTTTCGCACAGGCGTGGTTGTTAACACCAATGGGAATCCTGATATCGGAAAGGATAAACCTCACGGCTCGCCCGACTCTAATTCTGGAGGTGAAGATAAGAAGAAACTTGGTGTTAGAGCTATTGTTGGTATTGTGATAGGGATTGTTGGCTTACTTGGTGTAGGGGTTTTGGTATTTGTTATTTATGGTAAAAGACATAATAAGCCCGACAACAAAGTTAATACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCATGTGAAAGTGCTGGTGCCTGCGTTGCAGGAGGAACCGGTGGATTTAGTCTATCGAATAGTGTTCAAAATGTGGAAGCTGGTAATATGTTGATTTCAATTCAAGTTTTGAGAGATGTTACAAACAATTTTTGTGATGAGAACATATTGGGGAAGGGAGGTTTTGGCACTGTGTACAAAGGAGAATTGGACGATGGAACAAAGATTGCGGTTAAAAGGATGCAATCTGAAATGGTTGGTGACAAAGGGCTGGATGAGTTCAAATCTGAAATTGCGGTTCTTACTAAAGTTCGACACAGGCATTTGGTTGCACTCCACGGCTATTGCTTGGAGGACAATGAGAAACTTCTTGTTTATGAATACATGCCTCAGGGGACACTTAGTCAACATCTGTTTGACTGGAAAGATGACGGGTCAAAACCGCTTGAATGGAAGAGAAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACATCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGGGATGATATGCACGCTAAAGTATCTGACTTTGGTTTGGTTCGACTTGCTCCAGAAGGACAAGCCTCATTTCAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACTGGACGAGTCACCACAAAGGTTGACATATACAGCTACGGCGTGATTCTTATGGAGATGATAactggaagaagagcaattgagAACAGCCAACCAGAGGAAAACATCCACCTTGTTGCATGGTTCCGCAGGATGCTATTGAACAAAGACTCGTTCGATAAGGTCATTGATCCAGCAATGAATATCAACGAGGAAGGCTTGAAGAGTCTCTGGACTATTGCAGGATTGGCCAGTCAGTGTTGTGCAAGAGAGCCTCATCAACGCCCCAACATGGGACACATAGTGAACGTCCTAGCACCTCTTGTCGAGATTTGGAAGCCGGCTGAACCTGATGACGATGACATGTATGGGATTGACTTCGATATGAGTTTGCCTCAAGCACTAAGTCAGTGGCAGAATCTTGAAGGAATGAGTAACACACTCGATGTTTCGTATTCTTCATCAATGGTTGATAGTTGTGAAAATACACAGTCAAGTATACCGCCTCGGTCTCCTGGATTTGTTAATTCCTTCACATCTGCTGATGCGCGGTGA 2793 0.3938 MGFGVSYVLQLMVLFSLMFVSAWSQDDEVVMKKLKTTISKNNLDWSNNDFCKWEKVQCSGTKRVTSIELKSSTVEGYLPEELAKLTELTYFRCSGNSLSGDFPHMPNSLQKLYIDSNKFTSMPNDFFTNMSNLIEVAIDYNPFSQWQIPSNLKNCLALQTFSAVNVSFVGVIPEFFGEETFPSLTALKLSFNSLEGNLPNSLSGSSIQYLWVNGQKSNKKLNGTLFVLQNMTSLQQIWVHGNSFTGPIPDFSNLDQLYDVSLRDNQLSGVVPSSLTSLQSLKTVNLTNNDLQGSPPKFQDGVQVDMDMDRGRHSFCTKVVGQPCSQLVNVLLSVVEPFGYPLKIAQSWKDNDPCHGPNWLGIVCSSRGTIIIIDFENKGFSGSISPSFASLSSVTKLRLANNNLTGTIPKELASMPVLELLDVSNNSLYGQIPSFRTGVVVNTNGNPDIGKDKPHGSPDSNSGGEDKKKLGVRAIVGIVIGIVGLLGVGVLVFVIYGKRHNKPDNKVNTPNAIVVHPRHSGDGNAVKISVAACESAGACVAGGTGGFSLSNSVQNVEAGNMLISIQVLRDVTNNFCDENILGKGGFGTVYKGELDDGTKIAVKRMQSEMVGDKGLDEFKSEIAVLTKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLEWKRRLSIALDVARGVEYLHGLAHQIFIHRDLKPSNILLGDDMHAKVSDFGLVRLAPEGQASFQTRLAGTFGYLAPEYAVTGRVTTKVDIYSYGVILMEMITGRRAIENSQPEENIHLVAWFRRMLLNKDSFDKVIDPAMNINEEGLKSLWTIAGLASQCCAREPHQRPNMGHIVNVLAPLVEIWKPAEPDDDDMYGIDFDMSLPQALSQWQNLEGMSNTLDVSYSSSMVDSCENTQSSIPPRSPGFVNSFTSADAR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01162 930 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Tsu01g01162 930 Gene3D Ribonuclease Inhibitor 24 322 IPR032675 -
Tsu01g01162 930 MobiDBLite consensus disorder prediction 443 466 - -
Tsu01g01162 930 Gene3D Ribonuclease Inhibitor 327 453 IPR032675 -
Tsu01g01162 930 CDD STKc_IRAK 581 854 - -
Tsu01g01162 930 SUPERFAMILY L domain-like 42 299 - -
Tsu01g01162 930 PANTHER OSJNBA0070M12.3 PROTEIN 1 930 - -
Tsu01g01162 930 MobiDBLite consensus disorder prediction 905 930 - -
Tsu01g01162 930 SMART serkin_6 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01162 930 MobiDBLite consensus disorder prediction 452 466 - -
Tsu01g01162 930 ProSiteProfiles Protein kinase domain profile. 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01162 930 SUPERFAMILY L domain-like 328 435 - -
Tsu01g01162 930 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 930 - -
Tsu01g01162 930 Gene3D Transferase(Phosphotransferase) domain 1 653 867 - -
Tsu01g01162 930 SMART LRR_typ_2 278 300 IPR003591 -
Tsu01g01162 930 SMART LRR_typ_2 105 129 IPR003591 -
Tsu01g01162 930 SMART LRR_typ_2 181 205 IPR003591 -
Tsu01g01162 930 SMART LRR_typ_2 391 415 IPR003591 -
Tsu01g01162 930 SMART LRR_typ_2 254 277 IPR003591 -
Tsu01g01162 930 SUPERFAMILY Protein kinase-like (PK-like) 563 883 IPR011009 -
Tsu01g01162 930 Gene3D Phosphorylase Kinase; domain 1 547 652 - -
Tsu01g01162 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Tsu01g01162 930 Pfam Protein kinase domain 578 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01162 Tsu-Chr1 10765082 10768724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01162 43 865 Receptor kinase-like Gene Family AT1G55610 29.532 5.80e-81 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tsu01g01162 Pkinase 2e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01162 01 10765082 10768724 Tsu01g01162 01 10765082 10768724 ECH