Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01155 ATGGCTACcatcacaaaacaaaacattaatttctccaaattcaaacttcaaagcTGGTTTTTTCCCAATACCAAATTCACAAaatctcttcactttctcaatTTGGTACTCAAAAATCCCTCAATCTTCAAACCCTCTTATTTGGAGCACCCCAACAAAACTCaactcatcttcttctcttgtCATAACCCAAAAAGGTTTAGAAAACTTGTTCTTGATGATGATGGAAATTTAAGAATTTATAGTTTTTATCCTGAGCAAAAAAATACATGGGTTGTTGTTTGGTTAGGAATTtgggaaatgtgtaaagtcaaagGAAAATGTGGACCTAATTCAATTTGTATGCCAAGAGAAGATTTTTATAATTCAACTTATTGTATTTGTCCTTCTGGATTTGAGCCTGTTGAAGGTGGAAGTGAAAAGGGTTGTAAGCGAAAAATTCCACTTTCGAGTAATAATAATCATTTTCTTAGGCTTGATTATGTAAACTATACTAGTGGTTCTATGAATTCAATCTATGCTTTAAACTATACAATTTGTGAATCAAATTGTACAAGAGATTCGAGCTGTCTTGGATTTGGATTCAAATACGATGGATCGGGTTATTGTGTGTTGTTACGAGGAAAACAGCTTCAATATGGTTATTGGTCGCCGGGGACTGAACTTGCTTTGTTTTTGAGACTTGATCAAAAGGAATCAGAAGCTTCTAATTTCATTGGTATGACAGAAGTTATGCAAACAACTTGTCCGGTTAAGATAAGTTTGCCTTTACCACCGAAAGATTCGAACACAACTACTAGAAATATTGTGATTATTTGCACGCTTTTTGCTGCTGAACTTATTGCTGGTGTGGCGTTCTTTTGGTCTTTCCTTAAGAGGTATATCAAATATAGAGATATGGCTACCACGTTGGGTCTTGAGCTTTTACCTGCAGGTGGTCCGAAAAGGTTTACCTACTCGGAGATCAAAGCTGCTACTAATGATTTCTCGAATCTCATCGGGAGAGGTGGATTTGGAGATGTTTACAAAGGTGAGTTGCCGGATCATCGTGTTGTTGCGGTGAAGTGCTTAAAGAATGTTACTGGTGGTGATGCGGAATTTTGGGCGGAAGTTACCATCATTGCAAGGATGCATCACTTGAACTTGGTTCGATTATGGGGCTTTTGCGCCGAGAAAGGTCAAAGGATACTTGTTTATGAATATATCCCGGGTGGATCGTTGGATAAGTATCTCTTCAGAGTCAAATCTAAAAAGGGTAGCGGTGAATCCGAATCTGATATAAGTCATGATACTAGTTCCGATCCAAGTATCTTAGAAAAACCTGTTTTAGATTGGAACATGAGGTATAGAATAGCACTTGGTATGGCAAGGGCTATTGCATATCTACATGAGGAGTGTTTAGAATGGGTTTTGCATTGTGATATAAAACCAGAAAACATTCTATTAGGCGATGATTGTTGCCCTAAGATATCCGATTTCGGATTGGCAAAACTAAGGAAAAAAGAAGACATGGTGACTATGTCAAGAAGGAGAGGAACTCCTGGTTATATGGCACCTGAATGGATAACAGCAGATCCAATAACTTCAAAAGCTGATGTTTATAGTTTTGGTATGGTGTTATTAGAGCTTGTGAGTGGAGTGAGGAACTTTGAGATTCAAGGATCCGTGGCGAGGAGTGATGAATGGTATTTCCCTGGTTGGGCTTTTGATAAGATGTTTAAGGAAATGAGAGTTGAAGAGATTCTTGATAGTCAAATTTGTCATGCTTATGATAGTAAGGCACATTTTCAATTGGTTAATAGAATGGTGAAGACTGCAATGTGGTGTTTGCAGGATAGGCCTGAATCAAGGCCAACAATGGGAAAGGTGGCTAAGATGATAGAAGGGACTGTTGAGATCATGGACCCTAAGAAACCAACTGTTTTCTTCCTTGGGGAAGAGTAG 1944 0.3637 MATITKQNINFSKFKLQSWFFPNTKFTKSLHFLNLVLKNPSIFKPSYLEHPNKTQLIFFSCHNPKRFRKLVLDDDGNLRIYSFYPEQKNTWVVVWLGIWEMCKVKGKCGPNSICMPREDFYNSTYCICPSGFEPVEGGSEKGCKRKIPLSSNNNHFLRLDYVNYTSGSMNSIYALNYTICESNCTRDSSCLGFGFKYDGSGYCVLLRGKQLQYGYWSPGTELALFLRLDQKESEASNFIGMTEVMQTTCPVKISLPLPPKDSNTTTRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGRGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRVKSKKGSGESESDISHDTSSDPSILEKPVLDWNMRYRIALGMARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMRVEEILDSQICHAYDSKAHFQLVNRMVKTAMWCLQDRPESRPTMGKVAKMIEGTVEIMDPKKPTVFFLGEE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01155 647 Pfam Protein kinase domain 331 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01155 647 ProSiteProfiles PAN/Apple domain profile. 143 229 IPR003609 -
Tsu01g01155 647 ProSiteProfiles Protein kinase domain profile. 327 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01155 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Tsu01g01155 647 Gene3D Phosphorylase Kinase; domain 1 301 401 - -
Tsu01g01155 647 PANTHER OS10G0101000 PROTEIN 51 647 - -
Tsu01g01155 647 PANTHER OS07G0415500 PROTEIN 51 647 - -
Tsu01g01155 647 Pfam S-locus glycoprotein domain 41 135 IPR000858 GO:0048544
Tsu01g01155 647 SMART serkin_6 327 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01155 647 Gene3D Transferase(Phosphotransferase) domain 1 404 638 - -
Tsu01g01155 647 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Tsu01g01155 647 SUPERFAMILY Protein kinase-like (PK-like) 309 627 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01155 Tsu-Chr1 10698577 10700848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01155 315 639 Receptor kinase-like Gene Family AT4G18250 39.157 1.23e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu01g01155 Pkinase 5.5e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01155 01 10698577 10700848 Tsu01g01155 01 10698577 10700848 ECH