Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01153 ATGTCGATATCAGTGGACCATAATGATCAAAGAGCTGAAGCGATTCCCTGTTCCACAGCTACACCAAATTGGACTGTTCATGTTTCAGATATAAGAACAGTTAAGGTGAGTAACATATCACAGATTACTTCCAAAAAGGATATTGAAGAATTCTTTTCATTCTCAGGCGATATTCAATATATTGAGATGCAAAGGGAGTCTGATCGCACTCAGATTGCTTATGTTACCTTTAAAGATTCACAGGGAGCAGAAATGGCAGTTCTCTTGACGgGTTCTAAGATAGCTGACCTATATGTCACCATCTCGCCTGTGGAGAAGTACCAGCTTCCCCCTGATGCGCTTCCCTCGAGTCCAACAAACAAAAGTGCTGCTGCAGTTAAGAAGGCTGAAGATGTAATTAGTACTATGCTTGCCAAGGGTTTCATTTTAGGAAAGGATGCGATCAACAAGACAAAATCCTTCGATGAACGTCTTCAATTGACCTCAAATGCTTCTTCTGCAGTTGCATCCATTGATAATAAAATAGGTTTAAGTGATAAACTAAGTATTGGAACAACCATTGTCAACGAAAAGGTGAAAGAGATGGATGAAAGATATCAGCTTTCTGGAATGACAAAGTCTGCTATTGCTGTTGCCGAGCAAAAGGCAAGTAGTGCTGGATCCGTTATCATGAGTAATTCTTACGTCTTAACCGGAGCTTCATGGTTTTCAAGTGCATTTAGCGCTATTGCTAAGGCAGCTGAGGATGTCAGCTCGATGACCAAGGAGAAGCTTGAACAAGCTGAGGTGGACAAAAAGGAGATCATTTACAGTGAAAGAATAGGGACAGTCGATGGATATTCTCAGATGCACTTCGAAGACTCTTTAAACGGCGGCCCTGCAGTAGTTCCAGTTAATTCTGACAATGACAGTAAATCTGGTAATCAATTTTTAACATGA 939 0.4079 MSISVDHNDQRAEAIPCSTATPNWTVHVSDIRTVKVSNISQITSKKDIEEFFSFSGDIQYIEMQRESDRTQIAYVTFKDSQGAEMAVLLTGSKIADLYVTISPVEKYQLPPDALPSSPTNKSAAAVKKAEDVISTMLAKGFILGKDAINKTKSFDERLQLTSNASSAVASIDNKIGLSDKLSIGTTIVNEKVKEMDERYQLSGMTKSAIAVAEQKASSAGSVIMSNSYVLTGASWFSSAFSAIAKAAEDVSSMTKEKLEQAEVDKKEIIYSERIGTVDGYSQMHFEDSLNGGPAVVPVNSDNDSKSGNQFLT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01153 312 SMART rrm1_1 33 102 IPR000504 GO:0003723
Tsu01g01153 312 MobiDBLite consensus disorder prediction 295 312 - -
Tsu01g01153 312 MobiDBLite consensus disorder prediction 291 312 - -
Tsu01g01153 312 Gene3D - 28 102 IPR012677 -
Tsu01g01153 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 95 IPR000504 GO:0003723
Tsu01g01153 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Tsu01g01153 312 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 306 - -
Tsu01g01153 312 SUPERFAMILY RNA-binding domain, RBD 25 106 IPR035979 GO:0003676
Tsu01g01153 312 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 10 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01153 Tsu-Chr1 10688126 10691334 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01153 01 10688126 10691334 Tsu01g01153 01 10688126 10691334 ECH