Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01139 atgCCTGCTGCTGCGTCATTGCAGAAAATGGAGCACTCAAGTATGAACTCCGGCGAGTTTCCGGCCGGTTTAAGAGttcttgttgttgatgatgacgTCACTACCTTGAAGATAATTGAGCGAATGTCTGTTCGCTGCCATTATCGCGTCACTACATGCTCTGAGGCTACTGTTGCTTTAAAAATTCTGCGGGAAAGTAAAGGCTGTTTTGATGTTGTGCTTAGCGATGTTCATATGCCAGACATGGATGGCTATAAACTTCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACAGTCATGAAGGGAATTAGACACGGGGCTTGTGATTATTTTATTAAGCCTGTACGTTTGGAAGAACTTGGAAATATATGGCAGCATGTTGCTAGgaaatttttaaatgaaagtaaagAACATGATAATTCTGGCAGCAGAGACGATAATGGTCGCAATAAACGGGGGAATGATGATAACGATAACATTTCTTCTGCTGCTGGTGCAACCAAAGAATTAgttaaagaacaaaaaaagagaaGCAGCAATTtaaaagatgaagaagatgttgAATTGGAGACTGATGATCCATCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTGGAACTGCATCAACAATTTGTTAGTGCTGTGAATCAACTAGGGCTTGACAAGGCTGTGCCAAAGAAAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTGGCGAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGACTAAGTGGAGTGGCACAGCAACAGAATGAGATGCTAAACACAGTTCCTGGGACTATAGAATCCAAGCTAGCTGTTGCTGAAAGATACATACAAACTTTGGCTGCTTCTGGCTATGTTTCCCCTGAAACACTTGCAGCCCTTCATGCTGAACTCTTAGGTCACCCGGTAACTAACATAGTACCTACAGTGGACATGACTACACTAATGCAAGCACCTGTACAGGAGCGAAAACACACTGGTGTTGATGATCATGCTGTAGCATCTGGTCATCCTCTTGTAAAATGTCCTTCCGACAATGTCAATAATTTCCCTCAGTCCATCTTAAAAGTAGATAATTCATCGTTAGGATATGGAGCATGGCCGTCATCTAATATACTCGGTTCAGTCTCAAGGGGAACACTAGGCGTTCAGAATAATAACATGGTGATTGATATATTGCAGCACCAACAAAAGCACCAgcatcaacaaaaacaacagaAGTCACTAATACATGATCATTGTCGATCAATCAATGTTCAACCATCTTGCTTAGTGGTTCCTGCTCAATCTTCTGACACTTTCCAGGAAGTAAAATTTGTTGCTTCTGTCAACAAGGATTGCAGTTTCGGCAGAAATGCCATTATTGATTATAGTCAACAATCACAAAAATCAAATGATACATCCAGTACATCTCAATATCTTGGCAGGGATGCCAAAGCTACCTCCATTTCTCCTCTAATGTCCTCTTTTTCAGTCGGCTCCTGCAATAGCAATATTCAGCAGATTCAAAACTCAACTTCAACATTTGGTGCTGCGAGACCATTGCCTAGCCTTCTGCCCATGGCATTTAGACAAGTTCCATATGATATTAAATCCAGCGATTCACTTGATCAAGTATGTCTTAGGAATCTTGGATTTGTTGGGAAAGGCAACTACATATcaagttttgaaaatgaaattgaatcATCTGCAAGTGATTTTAGTCATATGAAAGTATTCGTAGCTAGCAATGGTAACACAGTGAAGGAGGAACCAAAGGAGGAACCAAATTTTATCAGATATTCAAATGTGAACCACCCAGTTCTTTAG 1872 0.383 MPAAASLQKMEHSSMNSGEFPAGLRVLVVDDDVTTLKIIERMSVRCHYRVTTCSEATVALKILRESKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELGNIWQHVARKFLNESKEHDNSGSRDDNGRNKRGNDDNDNISSAAGATKELVKEQKKRSSNLKDEEDVELETDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKKILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNEMLNTVPGTIESKLAVAERYIQTLAASGYVSPETLAALHAELLGHPVTNIVPTVDMTTLMQAPVQERKHTGVDDHAVASGHPLVKCPSDNVNNFPQSILKVDNSSLGYGAWPSSNILGSVSRGTLGVQNNNMVIDILQHQQKHQHQQKQQKSLIHDHCRSINVQPSCLVVPAQSSDTFQEVKFVASVNKDCSFGRNAIIDYSQQSQKSNDTSSTSQYLGRDAKATSISPLMSSFSVGSCNSNIQQIQNSTSTFGAARPLPSLLPMAFRQVPYDIKSSDSLDQVCLRNLGFVGKGNYISSFENEIESSASDFSHMKVFVASNGNTVKEEPKEEPNFIRYSNVNHPVL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01139 623 SMART REC_2 24 136 IPR001789 GO:0000160
Tsu01g01139 623 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Tsu01g01139 623 PIRSF RR_ARR_type-B 7 619 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tsu01g01139 623 Gene3D - 207 270 - -
Tsu01g01139 623 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Tsu01g01139 623 MobiDBLite consensus disorder prediction 147 168 - -
Tsu01g01139 623 MobiDBLite consensus disorder prediction 147 210 - -
Tsu01g01139 623 Pfam Response regulator receiver domain 26 133 IPR001789 GO:0000160
Tsu01g01139 623 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Tsu01g01139 623 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 18 458 - -
Tsu01g01139 623 MobiDBLite consensus disorder prediction 181 196 - -
Tsu01g01139 623 Pfam Myb-like DNA-binding domain 213 261 IPR001005 -
Tsu01g01139 623 Gene3D - 21 146 - -
Tsu01g01139 623 SUPERFAMILY CheY-like 23 144 IPR011006 -
Tsu01g01139 623 CDD REC_typeB_ARR-like 26 140 - -
Tsu01g01139 623 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Tsu01g01139 623 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 458 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01139 Tsu-Chr1 10497690 10504717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01139 19 282 Response Regulator Gene Family AT2G25180 56.767 1.50e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu01g01139 Response_reg 1.8e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01139 01 10497690 10504717 Tsu01g01139 01 10497690 10504717 ECH
Tsu01g01139 01 10497690 10504717 Tsu07g00700 07 5669782 5674160 PCT