Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g01133 | ATGTCTTCTTCACGAACAACAACCGAAACAGAAACACAAGACTCACAAGCGCCGCTCCTCCGTCCACGTCATGACGGCGGCGGTCGAGGTACTTCCCTCGCGCTCTTACTCGGACGCGCCGCCGGAAGAAGAGGACCTTCGGTGCTTGTACGAGAGACAGCAGCGCGTGAGCTCGAAGAACGTCGTGCTGATTGGGGATACTCGAAGCCGGTTGTAGCGCTTGACATGTCATGGAATATGGCTTTCGTTGTTGTATCGGCGGTGATGCTATTTTGCACCTTTGATGAGCATCCGAATACGCCGATCCGTGTTTGGATCATCGGTTACGCGCTTCAGTGTTTCGTTCACGTTGTTCTGGTTTGGATTGAGTATCACCGTCGTAGTCGGAGGGATTCACGGCGGCGGCAGAGAGGTAGCGATCCTGAAATGAGTTCTGATGGATACGACAGTGATGACAGCGATGTGAACTCGTCTCAATCCAGATTTACCAAGCGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGCTGGGCTTTTACTGGATTGTCTCTGCAGATGATATGCTTCTGCAAGATGCTCCGCACTTGTACTGGTTGGCCGTTATCTTTCTGGCATTTGATGTGTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTACCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACagGAAGGTGCGTCAGAAGCAGATCTTAGTATACTTCCAAAATATAGATTTCGATTATTAAACAATGAGGAGAAGGATAATGGTGGAGCTGGAACAATGGTTCCCATAGAAACCACCAGTGCATACTTGGCAAATGAGCGGATGCTTTTACCGGAGGATGCAGAATGCTGTATATGCCTCTGCACATACGAGGATGGAGTGGAGCTTCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAAATGAATGCAACTTGTCCTCTCTGTAAGTACAATATTCTCAAGGGAAACGAACAGGTATGA | 1056 | 0.4744 | MSSSRTTTETETQDSQAPLLRPRHDGGGRGTSLALLLGRAAGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLFCTFDEHPNTPIRVWIIGYALQCFVHVVLVWIEYHRRSRRDSRRRQRGSDPEMSSDGYDSDDSDVNSSQSRFTKRCESINTGVSFLWWMLGFYWIVSADDMLLQDAPHLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLLNNEEKDNGGAGTMVPIETTSAYLANERMLLPEDAECCICLCTYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV | 351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g01133 | 351 | PANTHER | TARGET OF ERK KINASE MPK-1 | 12 | 351 | - | - | |
| Tsu01g01133 | 351 | MobiDBLite | consensus disorder prediction | 133 | 158 | - | - | |
| Tsu01g01133 | 351 | SUPERFAMILY | RING/U-box | 288 | 345 | - | - | |
| Tsu01g01133 | 351 | CDD | RING-H2_PA-TM-RING | 299 | 341 | - | - | |
| Tsu01g01133 | 351 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 245 | 346 | IPR013083 | - | |
| Tsu01g01133 | 351 | ProSiteProfiles | Zinc finger RING-type profile. | 300 | 341 | IPR001841 | - | |
| Tsu01g01133 | 351 | SMART | ring_2 | 300 | 340 | IPR001841 | - | |
| Tsu01g01133 | 351 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 12 | 351 | - | - | |
| Tsu01g01133 | 351 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Tsu01g01133 | 351 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Tsu01g01133 | 351 | Pfam | Ring finger domain | 299 | 341 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g01133 | Tsu-Chr1 | 10446357 | 10451374 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g01133 | 14 | 350 | C3H Transcription Factor Family | AT1G68070 | 67.751 | 1.77e-172 | 481 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu01g01133 | 01 | 10446357 | 10451374 | Tsu01g01133 | 01 | 10446357 | 10451374 | ECH |