Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01128 ATGGATTCATCAAACTCACTATGCTTCATAACCCACCAACAATTTTTCAATGTAGTTCGATCTGGTGACCTTGAAGGACTCAAAGAGTTACTTAAACATGTTAACAAAGGTGAATCCTCAAATgggtcatcatcatcatcatcaatttctGAATTCATGTCCATGCAAAATGATGCTGGAGAGACTTTATTGTATATAGCTGCAGAAAATGGTGTTAAGGATTTGTTCTGTTTCTTGTTAAGTTTCTGTGATTTGGAGATACTTAAGATTAGGTCTAAATCTGATATGAATGCATTTCATGTTGCAGCTAAGCGTGGCCATTtggAAATTGTGAGGGAGATTTTGAGTATTTGGCCCGAGGCTTGTAAGTTATGCGACTCCTCGAGCACTAGTCCACTTTATTTTGCTGCTGTACAAGACCATTTGGATGTAGTGAATGCTATTTTAGATGTTGATGTCAGTTCAATGATGATAGTAAGAAAAAACGGCAAAACTGCGTTGCACAATGCTTCTAGGTACGGCATTCTTCGCATTGTAAAAGCACTTATTGAAAGGGATTCAGCAATTGTTTGCATCAAAGATAGAAAAGGTCAAACTGCACTGCATATGGCTGTAAAAGGCCAAAGTACTTCAGTAGTTGAGGAGATTTTACAAGCCGACCCGATGGTATTGAACGAACGAGATAAGAAGGGTAATACAGCTCTTCACATGGCCACTCGGAAAGCTCGCTCGCAGATAGTGAGCTTTCTGTTGAGCTATGCATCTATGAATGTCAATGCcatcaataatcaacaagaaaCAGCCTTGGACTTGGCAGATAAACTTCCGTACGGAGATTCATCTTTGGAAATCAAGGAAGCCCTTTCGGAATGCGGTGCCAAGAATGCCAGACATATTGGGAAAATGAATGAAGCTATGGAACTTAAAAGAGCTGTGAGTGATATAAAGCACGAAGTTCAGTCACAACTAATACAAAACGAAAAAACTCGCAAACGGGTTTCTGGTATAGCTAAAGAATTGAGAAAGATTCATCGGGAGGCAATTCAAAACACGATAAATTCTGTCACGGTAGTTGCTGTCCTTTTTGCGTCAATAGCATTCATGGCTTTGTTCAGTTTGCCAGGTCAATATAGAAAGCTACAACCGGAGGCAGGGAAAGCGAATATAGCTCATGAGGTTGCGTTCAGTGTTTTCTGTCTTTTGAATGCAACGTCTCTTTTCATTTCTCTTgcggttgttgttgttcaaaTCACTTTGGTAGCTTGGGACACGAGGGCTCAAAGGCAGATTGTATCGGTGATTAACAAGCTAATGTGGACGGCTTGTTCATGTACTTGTGGAGCTTTTCTCGCAAtagcttttgtggttgttgGAAAGGAAAGATGGATGGCTACTACTGTAACCGTTTTGGGAACACCGATTCTAGTTGGAACTCTAGCATACTTGTGCTACTTTGTGTTTCGACGACATTTTGGATTTCGAAGTGATTCCCAGAGAGTACTAGTTAAGAGACCAAGTGGAAGCAAATCATTCTCGTGGTCTTACTCTGCGCATATATCAGACGTGGAGGAATATAATTCTGATGTTGAGAAGATGTATGCTCTGTGA 1608 0.385 MDSSNSLCFITHQQFFNVVRSGDLEGLKELLKHVNKGESSNGSSSSSSISEFMSMQNDAGETLLYIAAENGVKDLFCFLLSFCDLEILKIRSKSDMNAFHVAAKRGHLEIVREILSIWPEACKLCDSSSTSPLYFAAVQDHLDVVNAILDVDVSSMMIVRKNGKTALHNASRYGILRIVKALIERDSAIVCIKDRKGQTALHMAVKGQSTSVVEEILQADPMVLNERDKKGNTALHMATRKARSQIVSFLLSYASMNVNAINNQQETALDLADKLPYGDSSLEIKEALSECGAKNARHIGKMNEAMELKRAVSDIKHEVQSQLIQNEKTRKRVSGIAKELRKIHREAIQNTINSVTVVAVLFASIAFMALFSLPGQYRKLQPEAGKANIAHEVAFSVFCLLNATSLFISLAVVVVQITLVAWDTRAQRQIVSVINKLMWTACSCTCGAFLAIAFVVVGKERWMATTVTVLGTPILVGTLAYLCYFVFRRHFGFRSDSQRVLVKRPSGSKSFSWSYSAHISDVEEYNSDVEKMYAL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01128 535 Pfam Domain of unknown function 346 455 IPR026961 -
Tsu01g01128 535 Gene3D - 10 316 IPR036770 -
Tsu01g01128 535 SMART ANK_2a 59 87 IPR002110 GO:0005515
Tsu01g01128 535 SMART ANK_2a 230 260 IPR002110 GO:0005515
Tsu01g01128 535 SMART ANK_2a 162 191 IPR002110 GO:0005515
Tsu01g01128 535 SMART ANK_2a 196 226 IPR002110 GO:0005515
Tsu01g01128 535 SMART ANK_2a 94 123 IPR002110 GO:0005515
Tsu01g01128 535 SMART ANK_2a 128 158 IPR002110 GO:0005515
Tsu01g01128 535 Pfam Ankyrin repeat 162 194 IPR002110 GO:0005515
Tsu01g01128 535 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 2 535 - -
Tsu01g01128 535 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 2 535 - -
Tsu01g01128 535 SUPERFAMILY Ankyrin repeat 16 275 IPR036770 -
Tsu01g01128 535 ProSiteProfiles Ankyrin repeat profile. 230 252 IPR002110 GO:0005515
Tsu01g01128 535 Pfam Ankyrin repeats (3 copies) 196 259 IPR002110 GO:0005515
Tsu01g01128 535 Pfam Ankyrin repeats (3 copies) 64 150 IPR002110 GO:0005515
Tsu01g01128 535 ProSiteProfiles Ankyrin repeat region circular profile. 162 189 - -
Tsu01g01128 535 ProSiteProfiles Ankyrin repeat profile. 162 189 IPR002110 GO:0005515
Tsu01g01128 535 ProSiteProfiles Ankyrin repeat region circular profile. 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01128 Tsu-Chr1 10393066 10396294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01128 9 535 Miscellaneous Gene Families AT2G01680 68.750 0.0 722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01128 01 10393066 10396294 Tsu01g01128 01 10393066 10396294 ECH