Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01123 ATGATCCCAAACATTTTGAAACAGTGTCATCATCAATTTCACTATAACCCAACCCAAAATTTGAATGCCAAAACGCTCTTCACTTCACTCATTCACACCCtttccaatccaaaccaaaatgATTTTCATGAATCCAAAGGGAAAAatgaacaacaagaacaaaattCTGTCTTTCAGATTTCTCATCCTTGGCCTGAATGGGTAGACTTGATGGAATGTTTGCTCAAAAAGGGTCATTTTCATGCAGAGGGTAACCCATTTTTTAATCCTAATTTGGGTTCAATAGGGTCATTGGCTCAAAAAGACTCAAATCTTATTAGAACTGCTTGTCTCAATTTTGGTAGAGACAATTCTCATTTTTTAAGGTTTTTGTCTCGAAAAGATATAGGAGTTATTGTAACATTTGGATGTCCAAGCTTAGATAGGAAAGTGGTTAACTCAGGAAAGCGTCTGAGAGCACATGTTGGCATTGATGAAGGAAATGTGTGCAGCTCCTGCAATTTGAGGGGGAACTGTGAAAGGGCATTCGTCATAGCACGCGAAGATGAAGGTGGAAGAATGGTGGATGTTATGCGTATTATTTTGACATATGGACTTGACCCTGTTATTGGTTCGGTGGATAACAAACCATCTCTAAATAAAATGGTAAAAGAATCTGTGAGAAGACTGCTGAAAAAGATAGTAGAGTGCAGTACTGAAGAAAAAAACCCTAATATTCCAGACACCAACGAGGTTGCTGTCGAAGAAGTTCATCGGAACCCACAAGATAAAGGCAAAAAAGATGTTCCAATGAAGCAAGGCGATTGGCTTTGCCCCAATTGCAATTTCCACAACTTCGCTAGAAATATCAAGTGCTTGCACTGTGACAACTTCTGTGAGGaaaaaatcaagcaattgaagGAGGATAACAATCACTTACCTTTGAAGAAGGGAGACTGGATATGCGACAAATGCAACTTCCTCAATTTTGCAAGGAATACAAGATGTGTGCTATGTAAAGAAGGGCCTTCAAATCGTCGCATTAATCCAGGGGAGTGGGCATGCGAATCGTGCAACTACATCAATTTCAGAAGAAACATGGTTTGCCTTAAATGTGATCATAGAAGACCTAAAGTGTCAAATGCTTCAAATGATTCCCTTCAACCTCAGGGAGAAGATGGCAAACTGAACATTGTTGGATATCGGTTTGATGATAGTAACAAAGAATCGTCAATGGCGTCAGAAAGAAAAAGTAGGAAAAGAGATTCACATAAGTGGAGATTTGTAGAAGATGGAACTGAAAATGACAAGTACTTAGAGACCTCAAATGACACTTCAGAAGTTTTAGATTTTCCTATTGCTGGAGGTAAGACTGGCATGTCTGGGGCACAAAGGGGAGAGGCATATAAGAACGAGTCGTCAGATCAGTGCAAAAAGCATTCGTGGCAAAGTGAAACCGATGACGAGTTTAGTTCTTCTGATAACTTGAGTACCGATGATGAAGAGATGGCTGAATGGTTTGGAAAGGGTAAGAATGCAAGGTAG 1524 0.3845 MIPNILKQCHHQFHYNPTQNLNAKTLFTSLIHTLSNPNQNDFHESKGKNEQQEQNSVFQISHPWPEWVDLMECLLKKGHFHAEGNPFFNPNLGSIGSLAQKDSNLIRTACLNFGRDNSHFLRFLSRKDIGVIVTFGCPSLDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGNCERAFVIAREDEGGRMVDVMRIILTYGLDPVIGSVDNKPSLNKMVKESVRRLLKKIVECSTEEKNPNIPDTNEVAVEEVHRNPQDKGKKDVPMKQGDWLCPNCNFHNFARNIKCLHCDNFCEEKIKQLKEDNNHLPLKKGDWICDKCNFLNFARNTRCVLCKEGPSNRRINPGEWACESCNYINFRRNMVCLKCDHRRPKVSNASNDSLQPQGEDGKLNIVGYRFDDSNKESSMASERKSRKRDSHKWRFVEDGTENDKYLETSNDTSEVLDFPIAGGKTGMSGAQRGEAYKNESSDQCKKHSWQSETDDEFSSSDNLSTDDEEMAEWFGKGKNAR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01123 507 ProSitePatterns Zinc finger RanBP2-type signature. 313 332 IPR001876 -
Tsu01g01123 507 ProSitePatterns Zinc finger RanBP2-type signature. 269 288 IPR001876 -
Tsu01g01123 507 MobiDBLite consensus disorder prediction 442 507 - -
Tsu01g01123 507 ProSiteProfiles Zinc finger RanBP2 type profile. 342 371 IPR001876 -
Tsu01g01123 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 286 505 - -
Tsu01g01123 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 35 245 - -
Tsu01g01123 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 252 289 - -
Tsu01g01123 507 Pfam Zn-finger in Ran binding protein and others 309 333 IPR001876 -
Tsu01g01123 507 Pfam Zn-finger in Ran binding protein and others 344 366 IPR001876 -
Tsu01g01123 507 Pfam Zn-finger in Ran binding protein and others 265 290 IPR001876 -
Tsu01g01123 507 SUPERFAMILY Ran binding protein zinc finger-like 302 334 IPR036443 -
Tsu01g01123 507 ProSiteProfiles Zinc finger RanBP2 type profile. 309 338 IPR001876 -
Tsu01g01123 507 ProSiteProfiles Zinc finger RanBP2 type profile. 265 294 IPR001876 -
Tsu01g01123 507 SUPERFAMILY Ran binding protein zinc finger-like 335 371 IPR036443 -
Tsu01g01123 507 MobiDBLite consensus disorder prediction 464 480 - -
Tsu01g01123 507 ProSitePatterns Zinc finger RanBP2-type signature. 346 365 IPR001876 -
Tsu01g01123 507 SUPERFAMILY Ran binding protein zinc finger-like 257 291 IPR036443 -
Tsu01g01123 507 Gene3D - 300 336 - -
Tsu01g01123 507 Gene3D - 256 294 - -
Tsu01g01123 507 Gene3D - 337 372 - -
Tsu01g01123 507 PANTHER ZINC FINGER PROTEIN 286 505 - -
Tsu01g01123 507 PANTHER ZINC FINGER PROTEIN 35 245 - -
Tsu01g01123 507 PANTHER ZINC FINGER PROTEIN 252 289 - -
Tsu01g01123 507 SMART zf_4 267 291 IPR001876 -
Tsu01g01123 507 SMART zf_4 344 368 IPR001876 -
Tsu01g01123 507 SMART zf_4 311 335 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01123 Tsu-Chr1 10345274 10348992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01123 50 402 EF-hand Containing Proteins AT1G55040 37.701 2.71e-64 222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01123 01 10345274 10348992 Tsu01g01123 01 10345274 10348992 ECH