Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04121 ATGAAAGAAAACATTGATCTTGAAGTGGAAGCTTATGCAGAATATGAATCTGAAGTTACAAGCCAAGTTGCTTCTAATGTATCAACTCAAGAAACCTCTTCCAACATATCAAATCCAATAGGGATTAATCTTAATCATCCTAATTTAGATGATAATGATATATCTCTTGACTTAACTCTCAACTTGAAGAACAACGAGTTAAGGGATTCAAATTCAATAGGATTCTCAATCTCAAGCACTTCTGAGAGCAGCAATGAACCTGCATCGGCAACAATTCAACGAGTTTTCTCATGCAATTACTGTCAGAGAAAGTTTTTCAGCTCTCAAGCTCTTGGTGGACACCAAAATGCACACAAGAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATGGGAATTTTTTCTGATAGGTATAATGCTAGTTTAGCATCTCTACCTTTGCATGGTTCTTTTAGAACATTAGGGATAAAAGCACACTCTTCAATGCACTATGGTTTCTCAGCACCAACAACAATCCGGCCTCATAATCATCATGAGATGAAAAACAATACGAAATTCGAACAAGGGTGTGTCGGTTTTCCAATATTCTTGGAAGATGAGGAGTCAGAGTTGTTATGGCCTGGTAGTTTTCGACAGGCGTCCAAGGCAGGTGATGGACAGCAGAATTTCATACTCACTGAGGTGAATCCGTGTGTAGACAAGGAAAAATCTACACCTGATTTGACATTGAAACTTTGA 738 0.3794 MKENIDLEVEAYAEYESEVTSQVASNVSTQETSSNISNPIGINLNHPNLDDNDISLDLTLNLKNNELRDSNSIGFSISSTSESSNEPASATIQRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGIFSDRYNASLASLPLHGSFRTLGIKAHSSMHYGFSAPTTIRPHNHHEMKNNTKFEQGCVGFPIFLEDEESELLWPGSFRQASKAGDGQQNFILTEVNPCVDKEKSTPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04121 245 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Trre9g04121 245 Gene3D Classic Zinc Finger 75 141 - -
Trre9g04121 245 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Trre9g04121 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Trre9g04121 245 FunFam Zinc finger protein 2 75 142 - -
Trre9g04121 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 22 174 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04121 Trre-Chr9 49113660 49114397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04121 78 245 C2H2 Transcription Factor Family AT1G66140 48.485 4.04e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g04121 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04121 9 49113660 49114397 Trre9g04121 9 49113660 49114397 ECH
Trre5g00692 5 4735275 4735967 Trre9g04121 9 49113660 49114397 PCT