Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01242 ATGGGTAATAACTATAGATACATGTTTAATAGACTATTCAAGTTTGCAAATTCATGGAAGAAAAGTAACACACCAAGAGGTAGAAGAATTTTCAACAGAGATGTTGAAAAAGAGCAATTTCAATATGCTAGTAGTCATTGTCTTTCATCATACTACAGTGTTTTTGTGGTTAGATTAGCAATCATGGTAATGTTAGCTATCTTGATAGGACTATTGACCATATTAACATGGCATTTTACGAAGATTTATACGGCGAAATCATTGAGTAGTTTGGCGTATGGTTTGCGTTATGAACTTCTACAACGTCCGATTTTGAGGATGTGGAATATTTTGAACTCGACTTCTGAAATTACAACAGCTCAAGTCAAGTTATCTCAGTATGTTATCAGACGTTATAGCAATCCTGCATCTCAAGCAGAACAAGTTGAGTTATATGAAGCAATGAGAGCAGTAACATGGTCACTATTTGCTAGCAGAAAAGCTCTAAACTCAATAACAATCAATTACAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTTAAAGATAACAATACATTTTACATTTACTCAGATCTTTCAAATTACTCAATGGTTGCGACGACTTCTAACATGGTCAATACACTTTCAGCTCATCAAGCATGGGATGATAAAACAATTCATGGTAATTTTTCAGCAATTTGGTATAGAGAACCACTTGATCCGGTAACAGGCGAAAAAATCGGAAAAGCGATGAAAATAGCACCGGAAGATTTAATAAACATAGCAGGACTTTCACAAGTTCCTGATGGTGTAGCTACATGGCATGTAGCAGTTAGTAAGTTTACAGATTCGCCGTTGCTTTCGGCTGCATTACCTGTTTGGGATTCTGAAAATAAAAGTATTATGGCTGTTGTTGGTGTAACAACTGCTTTTTATAGTGTTGGACAGTTAATGAGAGAACTTGTTGAAATGCATAGTGGTCATATGTATTTAACTTCTCAACAAGGTTATTTACTTGCAACTTCTACAAGTGCACCTTTGCTTAGTAATTCAACTAAGCCACCTAAGCTTAAAATGGCTGTGGATTGTGAAGATGGTATTATAAAACTTGGAGCTGAGTGGTTGCAGAGAACTTATGGAAATCATTTTCCTAATTCAACTCATGAGGTTCATGTTGAGAATGCTAAGCTTGGTCATCAGCAATATTATATTGACTCATTCTACCTAAACTTGAAGAGGCTTCCCTTGGTAGGTGTAATCATCATACCAAGAAAGTATATAATGGGACAAGTGGATGAAAGAGCCTTCAAAACTTTGGTTATTCTGATATCTGCATCTTTATGTATTTTAGTGATTGGATGTGTTTGTATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTTAGAGCTGAATTGATTAGCCAACTTGAAGCAAGAAGGAAGGCAGAAGCATCGAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTAAGGACACCTATGGCAGCAGTAATCGGATTGCTGGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCGACAGTTACTCAAATAAGAAAATGTTCAACGGCTCTACTTCGTCTTCTTAATAACATATTGGATCTAAGCAAGGTGGAATCAGGAAAACTTGTACTAGAAGAAGCAGAATTCGACTTAGGACGCGAACTTGAAGGACTTGTAGATATGTTTTCTGTTCAATGTATTAATCACAATGTGGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAACTTGTTAGAGGTGATTCTGCTAGGGTGGTTCAAGTATTTGCAAATTTAATCAACAATTCAATCAAGTTTACTACATCTGGTCATGTTATTCTCCGAGGATGGTGTGAATACCCGAATTCTTGCAACGATAGTCCGAATTTTTATCTTGATCAGAAGAAATCAAGGATTATACATAAGAGCAAAGATAAGATAAATGCAAATCATGCAAAGAGAATATCTATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAAGACACAGGCTGTGGTATTGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAACAAGCTGATCCATCGACTACTCGACTGCATGGAGGGACTGGTCTTGGTCTTTGCATTGTTAGGAACTTGGTTAATAAAATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAAGGAACATTGATGAGATTATGTTTGCTTCTCAGTGCACCCATGGATGTCTCGGAACAACATTGTGATGTAAATTTGACAGACAACGGCTTAGTGGTATTGCTTGCACTACAAGGCAACATGGGTAGATTAATAACATCAAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAATCCATAATAATAACAACTTTGATGCACACTATCCAACAAATCTTGAAGGATTCAAGTCCAAATTACTCAGCATAAAAGATATGAGGAACCCAATTTTTATCATTGTTGTTGACATTGGTTTACTTGACCTAAGCACAGATATATGGAAAGAACAACTTAACTTGCTTCACAAGTATTTCGGAAGAGCAAAGTTTGTGTGGATTTTAAATCATGACACATCAAATACCATAAAGACGGAGCTTCGTCGGAAAGGGCATTTATTAATGGTTAATAAACCACTTTACAAAGGTAAAATGATTCATATTTTGGAAGCTGTTATAAAAGAGAGAAATCTTGAGCTACAAAAGAAAAATATGAAAGAAGGTGACTCACATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCTACTAGCTCCGATGATTCGGACATATCTGAAATCAGTGAAAAACCAATTGTAAAGGTAATCAATGAAAATGAACATTTGGAAGAAAATAATATAAGGAAAGAAGAATCTTGTTCCTCTGAAGACAACAAAGCTAAATCGTTGTCCATTAAGGACACAACTTTTGCAATAGAGGCTCATGATAGGGTGACAAGGTCAAGAAAAGAAGTGAATGATAAGAAATCTCTTGAGGGATTAAGAATTTTGCTTGCAGAAGATACGCCGGTAATTCAAAGGGTTGCTACTATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGAGGCTCTTAATTACATGGTCAGTTCTGAAGATTGTAGAAGAGAGTCTCTTCAGAAGGAAAGAAATTCAAGATCACAAACTGAGATTTCGGTTTGTCGTCCATACGATTTGATCCTAATGGATTGTCAGATGCCGAAGATGGATGGATATGAGGCAACAAAAGCGATAAGGAAATCGGAGGAGGGAACAGGAAAACACATTCCAATTGTTGCTCTTACAGCACATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCGATTGATTTCAAGAAAATGGTCTCAACCATTCTCTCACTCACTAAGCCGGCATCTTGA 3546 0.3655 MGNNYRYMFNRLFKFANSWKKSNTPRGRRIFNRDVEKEQFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPASQAEQVELYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVATTSNMVNTLSAHQAWDDKTIHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSENKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLSNSTKPPKLKMAVDCEDGIIKLGAEWLQRTYGNHFPNSTHEVHVENAKLGHQQYYIDSFYLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCNDSPNFYLDQKKSRIIHKSKDKINANHAKRISMRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVSEQHCDVNLTDNGLVVLLALQGNMGRLITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSIHNNNNFDAHYPTNLEGFKSKLLSIKDMRNPIFIIVVDIGLLDLSTDIWKEQLNLLHKYFGRAKFVWILNHDTSNTIKTELRRKGHLLMVNKPLYKGKMIHILEAVIKERNLELQKKNMKEGDSHEFLEIDSTHFDAATSSDDSDISEISEKPIVKVINENEHLEENNIRKEESCSSEDNKAKSLSIKDTTFAIEAHDRVTRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVEALNYMVSSEDCRRESLQKERNSRSQTEISVCRPYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKKMVSTILSLTKPAS 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01242 1181 CDD REC_hyHK_CKI1_RcsC-like 1033 1173 - -
Trre9g01242 1181 CDD HisKA 485 546 IPR003661 GO:0000155|GO:0007165
Trre9g01242 1181 PRINTS Bacterial sensor protein C-terminal signature 733 746 IPR004358 GO:0016310|GO:0016772
Trre9g01242 1181 PRINTS Bacterial sensor protein C-terminal signature 692 702 IPR004358 GO:0016310|GO:0016772
Trre9g01242 1181 PRINTS Bacterial sensor protein C-terminal signature 709 727 IPR004358 GO:0016310|GO:0016772
Trre9g01242 1181 PRINTS Bacterial sensor protein C-terminal signature 674 688 IPR004358 GO:0016310|GO:0016772
Trre9g01242 1181 ProSiteProfiles Response regulatory domain profile. 1032 1177 IPR001789 GO:0000160
Trre9g01242 1181 SMART REC_2 1031 1173 IPR001789 GO:0000160
Trre9g01242 1181 SUPERFAMILY CheY-like 1029 1177 IPR011006 -
Trre9g01242 1181 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 539 745 IPR036890 -
Trre9g01242 1181 Pfam His Kinase A (phospho-acceptor) domain 485 550 IPR003661 GO:0000155|GO:0007165
Trre9g01242 1181 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 472 551 IPR036097 GO:0000155|GO:0007165
Trre9g01242 1181 ProSiteProfiles Histidine kinase domain profile. 491 749 IPR005467 -
Trre9g01242 1181 Gene3D - 552 750 IPR036890 -
Trre9g01242 1181 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 597 747 IPR003594 -
Trre9g01242 1181 SMART HisKA_10 484 550 IPR003661 GO:0000155|GO:0007165
Trre9g01242 1181 SMART HKATPase_4 597 749 IPR003594 -
Trre9g01242 1181 Gene3D - 472 551 - -
Trre9g01242 1181 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 754 - -
Trre9g01242 1181 Pfam Response regulator receiver domain 1033 1173 IPR001789 GO:0000160
Trre9g01242 1181 FunFam Histidine kinase 1-like protein 472 551 - -
Trre9g01242 1181 Gene3D - 1009 1178 - -
Trre9g01242 1181 Coils Coil 969 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01242 Trre-Chr9 10539102 10545404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01242 6 1181 Histidine Kinase Gene Family AT2G17820 65.717 0.0 1584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g01242 HATPase_c 4.9e-24 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01242 9 10539102 10545404 Trre9g01242 9 10539102 10545404 ECH
Trre9g01242 9 10539102 10545404 Trre15g02637 15 22227359 22232978 PCT