Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05885 ATGGCTATGGCAAGAGATAAAAAAGAAGATGAAGAAGAGGTTCATAATCAAAATCAAAAAGGTGGGAAGAGATTGAAATGCATGAACAAGATGAAGAATGAACAAGAAAAAAAAGTTGTAGTTGATGAAGAACTAGTAGAAAGTGAACTTCCATTGAAACCAGACCTTTTCTTCTACCCAACAACACCAACATCTTTTGTTGTTGCAGATGCACTTGAATCAGATTTTCCCATAATTTATGTCAACAAAGTCTTTGAAATTTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTAGAAACTGTCGATTCTTACAATATAGAGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCAGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTCAACAGACTGAGACTTACACCGATTCATGACGATGATGGAATTGTGACACACGTAATAGGTATCCAGATATTTTCCGAGGCAAACATAGATCTTAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAACTGCTAAATATTCTCCCAAGAGTGGAAAGTTATTGTACAGTCCACAGCAGCGTGAAGAGATGTGCGGTATTCTTCAGCTTTCTGATGAAGTCTTAGCACACAACATTTTGTCGCGCTTGACACCTAGGGATGTTGCATCCATTGGTTCTGTTTGCAGGAGGATCCGTCAATTAACAAAGAACGAGCATGTTAGGAAGATGGTTTGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACAAAGAAGTTGGGATGGGGTCGTCTGTCTCGGGAGCTTACTACTCTCGAGGCTGTGTGCTGGAAAAAAGTGACAGTTGGAGGTGGGGTTGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCCGCAGGAAATAGGCTTGTATTGTTTGGAGGTGAAGGAGTTGATATGCAGCCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCAAAGGGTTAGTGTGAAATCATCCCCGCCTGGACGGTGGGGCCACACACTCTCTTGCTTAAATAATTCTTGGCTGGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTACTCGATTTGGATGCTCAACAACCAACATGGAAGGAAGTATTCGGCGGAGCACCACCTCTTCCAAGATCATGGCACAGCTCTTGCACAATTGAAGGTTCCAAATTGGTCGTCTCAGGTGGTTGTACAGATGCTGGAGTACTTCTCAGTGATACATACTTACTAGACCTTACAATAGATAATCCTACTTGGAGAGAGGTTCCAACTTCATGGACACCACCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCAGAATGGACGCAACTAGAATGTAGTGCATTCACTGGATTAGCAAATCAAAATGCAGTTGTACCTCCTCCTAGATTAGATCATGTTGCTGTAAGCATGCCTTGTGGGAGGGTCATTATATTTGGAGGTTCCATTGCAGGTCTTCACTCACCGTCTCAGCTATTTCTATTGGATCCTGCTGAAGAGAAACCATCATGGAGGATTCTCAATGTTCCCGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTGTTGGGTGGACATACTGGAGAGGAATGGGTACTCAATGAGTTGCATGAGTTATGCTTGGCAAGCCGACAAGACTCCGACATGTGA 1914 0.431 MAMARDKKEDEEEVHNQNQKGGKRLKCMNKMKNEQEKKVVVDEELVESELPLKPDLFFYPTTPTSFVVADALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGIVTHVIGIQIFSEANIDLNRVSYPVFRETCIQDFDKTAKYSPKSGKLLYSPQQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLSRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVKSSPPGRWGHTLSCLNNSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREVPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPEWTQLECSAFTGLANQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05885 637 Gene3D - 295 500 IPR015915 GO:0005515
Trre7g05885 637 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g05885 637 MobiDBLite consensus disorder prediction 1 27 - -
Trre7g05885 637 Gene3D - 501 631 IPR015915 GO:0005515
Trre7g05885 637 FunFam Putative LOV domain-containing protein 295 500 - -
Trre7g05885 637 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 43 631 - -
Trre7g05885 637 NCBIfam PAS domain S-box protein 74 172 IPR000014 -
Trre7g05885 637 Pfam PAS domain 72 173 IPR000014 -
Trre7g05885 637 Pfam Galactose oxidase, central domain 432 483 - -
Trre7g05885 637 Pfam Galactose oxidase, central domain 383 430 - -
Trre7g05885 637 Pfam F-box domain 224 261 IPR001810 GO:0005515
Trre7g05885 637 CDD PAS 62 172 IPR000014 -
Trre7g05885 637 Pfam Kelch motif 542 589 IPR011498 GO:0005515
Trre7g05885 637 SMART pac_2 137 178 IPR001610 -
Trre7g05885 637 FunFam Adagio protein 1 54 184 - -
Trre7g05885 637 FunFam Putative LOV domain-containing protein 501 633 - -
Trre7g05885 637 Gene3D PAS domain 59 184 - -
Trre7g05885 637 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 173 IPR035965 -
Trre7g05885 637 CDD F-box_AtADO-like 223 269 - -
Trre7g05885 637 Gene3D - 217 268 - -
Trre7g05885 637 SUPERFAMILY F-box domain 218 299 IPR036047 GO:0005515
Trre7g05885 637 Pfam Galactose oxidase, central domain 318 368 - -
Trre7g05885 637 SUPERFAMILY Galactose oxidase, central domain 305 622 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05885 Trre-Chr7 63500061 63502658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05885 65 186 AGC Kinase Gene Family AT5G58140 33.065 1.51e-12 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05885 7 63500061 63502658 Trre7g05885 7 63500061 63502658 ECH